AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lomi2g04367 | ATGGTGGCTGTGCCAAAACCTCCTATTGAACAATTATTTATGCAAACTACTAAACCAAACACCAACCCATTAATTATTCCTTCTATTCCTCTCATTGACCTCTCTAAACCTGAATCCAAACACCATCTTGTTAAAGCATGTCAAGATTTCGGTTTCTTTAAAGTTGTTAATCATGGTGTTCCAACAAAGTTCATTAATAAACTAGAATCAGAAGCTATTAAGTTCTTCTCTTCACCTCTTTCCGATAAAGAAAAATCCGGTCCACCCGTACCGTTTGGTTATGGAAACAAAAGTATTGGTCAAAACGGAGATATCGGGTGGGTCGAATATCTTCTTCTCAATGCCAAACCCGAATCCACTTACCCGGAAAATTTCCAGGTTGTTGTAGCTGATTATGTAACATCAGTTAAGAATATGGCATGTGAGATATTGGAGTTATTGGCGGATGAAATGAAATTACAACCAAGAAATGTATTCAGTAAATTATTGAAGGATGAACAGAGTGATTCTATTTTTCGAGTAAATCACTACCCACCATGCCCTGAGTTTCAAGAAAATGAAAAAAATGGGGAAAAATTGGTGGGTTTTGTAGAACACACAGACCCACAAATTATATCGGTTTTACGATCTAATAACACTTCTGGACTTGAAATTTCGTTAAGAGATGGAAGTTGGATGTCAGTTCCTCCAGATTCCGATTCCTTTTTCATCAATGTTGGTGATTCATTACAGGTGATGACCAATGGAAGATTCAAGAGTGTAAAGCATAGGGTGGTGGCAAATGGTACAAAGAGTAGGGTCTCTATGATTTATTTTGGAGGACCTCCGTTAAGTGAGAAAATAGCACCATTACCCTCACTTATGCAAGGAGAGGAAGATAGTTTGTACAAGGAGTTCACTTGGTTTGAGTACAAGAAATCCGCATTCAAATCAAGATTGGCGGATAATCGATTAGGTCTCTTTGAAAAAATCATTGCGTCTTAA | 984 | 37.5 | MVAVPKPPIEQLFMQTTKPNTNPLIIPSIPLIDLSKPESKHHLVKACQDFGFFKVVNHGVPTKFINKLESEAIKFFSSPLSDKEKSGPPVPFGYGNKSIGQNGDIGWVEYLLLNAKPESTYPENFQVVVADYVTSVKNMACEILELLADEMKLQPRNVFSKLLKDEQSDSIFRVNHYPPCPEFQENEKNGEKLVGFVEHTDPQIISVLRSNNTSGLEISLRDGSWMSVPPDSDSFFINVGDSLQVMTNGRFKSVKHRVVANGTKSRVSMIYFGGPPLSEKIAPLPSLMQGEEDSLYKEFTWFEYKKSAFKSRLADNRLGLFEKIIAS | 327 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lomi2g04367 | 327 | Gene3D | - | 5 | 315 | IPR027443 | - | |
| Lomi2g04367 | 327 | FunFam | Gibberellin 2-beta-dioxygenase 1 | 8 | 314 | - | - | |
| Lomi2g04367 | 327 | SUPERFAMILY | Clavaminate synthase-like | 23 | 315 | - | - | |
| Lomi2g04367 | 327 | Pfam | 2OG-Fe(II) oxygenase superfamily | 169 | 273 | IPR044861 | - | |
| Lomi2g04367 | 327 | Pfam | non-haem dioxygenase in morphine synthesis N-terminal | 29 | 118 | IPR026992 | - | |
| Lomi2g04367 | 327 | ProSiteProfiles | Fe(2+) 2-oxoglutarate dioxygenase domain profile. | 167 | 275 | IPR005123 | - | |
| Lomi2g04367 | 327 | PANTHER | 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED | 27 | 306 | IPR050231 | GO:0009416(PANTHER)|GO:0016706(PANTHER)|GO:0045487(PANTHER)|GO:0052634(PANTHER) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lomi2g04367 | K04125 | gibberellin 2beta-dioxygenase [EC:1.14.11.13] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lomi | Lomi-Chr2:49008242 | Lomi4g00198 | Lomi-Chr4:1977950 | dispersed | |
| Lomi | Lomi-Chr1:2487292 | Lomi2g04367 | Lomi-Chr2:49008242 | wgd | |
| Lomi | Lomi-Chr2:49008242 | Lomi3g00740 | Lomi-Chr3:6073893 | wgd | |
| Lomi | Lomi-Chr2:49008242 | Lomi5g02125 | Lomi-Chr5:31893323 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Lomi1g00289 | . | 62 | 373 | GA20OX gene family | AT5G51810 | 29.412 | 2.10e-40 | 144.0 | |
| Lomi1g00938 | LST | 62 | 363 | GA20OX gene family | AT5G51810 | 26.959 | 5.41e-24 | 99.0 | |
| Lomi1g01109 | . | 42 | 378 | GA20OX gene family | AT5G51810 | 29.769 | 8.53e-47 | 160.0 | |
| Lomi1g01842 | . | 40 | 354 | GA20OX gene family | AT4G25420 | 28.438 | 2.08e-38 | 139.0 | |
| Lomi1g01880 | . | 56 | 357 | GA20OX gene family | AT4G25420 | 26.733 | 2.56e-27 | 108.0 | |
| Lomi1g01959 | . | 23 | 376 | GA20OX gene family | AT5G51810 | 62.5 | 2.02e-170 | 478.0 | |
| Lomi1g02021 | . | 59 | 358 | GA20OX gene family | AT4G25420 | 32.68 | 2.00e-38 | 138.0 | |
| Lomi1g02248 | . | 63 | 337 | GA20OX gene family | AT5G51810 | 28.276 | 9.14e-31 | 120.0 | |
| Lomi1g02287 | . | 37 | 334 | GA20OX gene family | AT5G07200 | 32.895 | 9.14e-47 | 161.0 | |
| Lomi1g02288 | . | 30 | 356 | GA20OX gene family | AT1G60980 | 30.746 | 2.80e-48 | 166.0 | |
| Lomi1g02491 | . | 58 | 357 | GA20OX gene family | AT4G25420 | 29.934 | 3.67e-36 | 133.0 | |
| Lomi1g03646 | . | 54 | 357 | GA20OX gene family | AT4G25420 | 28.758 | 1.59e-30 | 116.0 | |
| Lomi1g03690 | . | 177 | 335 | GA20OX gene family | AT5G07200 | 33.125 | 1.01e-21 | 92.4 | |
| Lomi1g03787 | . | 58 | 367 | GA20OX gene family | AT5G51810 | 34.675 | 4.83e-49 | 166.0 | |
| Lomi2g00619 | . | 294 | 358 | GA20OX gene family | AT1G44090 | 35.821 | 3.05e-07 | 44.3 | |
| Lomi2g00784 | . | 40 | 368 | GA20OX gene family | AT4G25420 | 31.454 | 5.02e-49 | 167.0 | |
| Lomi2g02037 | . | 54 | 334 | GA20OX gene family | AT5G51810 | 31.206 | 3.46e-44 | 154.0 | |
| Lomi2g02498 | . | 39 | 369 | GA20OX gene family | AT5G51810 | 30.383 | 3.14e-41 | 146.0 | |
| Lomi2g03561 | LST | 61 | 366 | GA20OX gene family | AT5G51810 | 27.554 | 1.93e-25 | 103.0 | |
| Lomi2g03680 | . | 34 | 351 | GA20OX gene family | AT1G60980 | 29.358 | 7.79e-45 | 155.0 | |
| Lomi2g03681 | . | 56 | 364 | GA20OX gene family | AT1G60980 | 29.299 | 1.20e-40 | 144.0 | |
| Lomi2g03682 | . | 54 | 357 | GA20OX gene family | AT1G60980 | 32.362 | 3.43e-44 | 154.0 | |
| Lomi2g04367 | . | 62 | 373 | GA20OX gene family | AT5G51810 | 28.793 | 6.14e-38 | 137.0 | |
| Lomi3g00631 | ACH,LST | 83 | 369 | GA20OX gene family | AT4G25420 | 25.086 | 8.84e-16 | 75.5 | |
| Lomi3g00634 | . | 55 | 372 | GA20OX gene family | AT5G07200 | 26.087 | 8.41e-24 | 98.6 | |
| Lomi3g00635 | . | 36 | 364 | GA20OX gene family | AT1G60980 | 33.631 | 3.01e-51 | 173.0 | |
| Lomi3g00740 | . | 56 | 346 | GA20OX gene family | AT5G51810 | 31.25 | 1.79e-42 | 149.0 | |
| Lomi3g00765 | . | 79 | 351 | GA20OX gene family | AT1G60980 | 28.169 | 6.83e-37 | 134.0 | |
| Lomi3g00875 | . | 44 | 352 | GA20OX gene family | AT4G25420 | 36.308 | 1.80e-58 | 192.0 | |
| Lomi3g00876 | . | 44 | 352 | GA20OX gene family | AT4G25420 | 34.769 | 5.40e-55 | 183.0 | |
| Lomi3g01455 | . | 61 | 357 | GA20OX gene family | AT4G25420 | 26.0 | 5.04e-24 | 99.0 | |
| Lomi3g02297 | . | 57 | 358 | GA20OX gene family | AT1G44090 | 26.861 | 1.44e-23 | 97.8 | |
| Lomi3g02362 | . | 40 | 364 | GA20OX gene family | AT5G51810 | 31.627 | 1.15e-45 | 158.0 | |
| Lomi3g03046 | . | 40 | 364 | GA20OX gene family | AT5G51810 | 33.435 | 6.61e-55 | 182.0 | |
| Lomi3g03159 | . | 61 | 349 | GA20OX gene family | AT5G51810 | 30.333 | 2.17e-37 | 135.0 | |
| Lomi3g03260 | . | 40 | 368 | GA20OX gene family | AT4G25420 | 33.429 | 8.29e-58 | 191.0 | |
| Lomi4g00198 | . | 61 | 349 | GA20OX gene family | AT5G51810 | 30.333 | 1.82e-38 | 139.0 | |
| Lomi4g00406 | . | 38 | 107 | GA20OX gene family | AT4G25420 | 32.394 | 5.79e-08 | 46.2 | |
| Lomi4g00407 | . | 42 | 306 | GA20OX gene family | AT5G51810 | 32.721 | 3.14e-36 | 131.0 | |
| Lomi4g00416 | . | 42 | 356 | GA20OX gene family | AT5G51810 | 30.625 | 2.69e-41 | 146.0 | |
| Lomi4g02736 | . | 36 | 364 | GA20OX gene family | AT1G60980 | 33.828 | 1.23e-50 | 172.0 | |
| Lomi4g02737 | LST | 58 | 369 | GA20OX gene family | AT4G25420 | 22.397 | 1.84e-11 | 62.4 | |
| Lomi4g02738 | ACH,LST | 83 | 369 | GA20OX gene family | AT4G25420 | 27.458 | 1.28e-16 | 77.8 | |
| Lomi4g02781 | ACH,LST | 44 | 354 | GA20OX gene family | AT4G25420 | 21.646 | 7.24e-11 | 61.2 | |
| Lomi4g03009 | . | 51 | 338 | GA20OX gene family | AT1G60980 | 29.452 | 8.13e-38 | 137.0 | |
| Lomi5g00091 | ACH,LST | 31 | 322 | GA20OX gene family | AT1G60980 | 20.635 | 2.31e-08 | 53.5 | |
| Lomi5g00127 | . | 34 | 359 | GA20OX gene family | AT4G25420 | 31.642 | 1.94e-47 | 163.0 | |
| Lomi5g00654 | . | 58 | 361 | GA20OX gene family | AT4G25420 | 35.505 | 2.12e-46 | 160.0 | |
| Lomi5g01240 | . | 25 | 375 | GA20OX gene family | AT4G25420 | 66.856 | 2.46e-180 | 503.0 | |
| Lomi5g01585 | . | 40 | 369 | GA20OX gene family | AT4G25420 | 35.119 | 6.10e-60 | 196.0 | |
| Lomi5g02010 | ACH | 63 | 329 | GA20OX gene family | AT5G51810 | 31.985 | 5.30e-23 | 95.9 | |
| Lomi5g02044 | . | 57 | 369 | GA20OX gene family | AT5G07200 | 32.099 | 1.28e-46 | 161.0 | |
| Lomi5g02125 | LST | 61 | 368 | GA20OX gene family | AT4G25420 | 28.115 | 8.82e-20 | 86.7 | |
| Lomi6g00856 | . | 61 | 330 | GA20OX gene family | AT4G25420 | 31.65 | 1.86e-27 | 108.0 | |
| Lomi6g01039 | . | 38 | 348 | GA20OX gene family | AT1G60980 | 34.375 | 6.08e-49 | 167.0 | |
| Lomi6g01219 | . | 36 | 342 | GA20OX gene family | AT4G25420 | 29.595 | 1.21e-45 | 158.0 | |
| Lomi6g02828 | . | 59 | 344 | GA20OX gene family | AT4G25420 | 27.946 | 8.30e-28 | 109.0 | |
| Lomi7g01037 | . | 38 | 348 | GA20OX gene family | AT1G60980 | 34.062 | 2.69e-48 | 165.0 | |
| Lomi7g01163 | . | 58 | 354 | GA20OX gene family | AT4G25420 | 27.575 | 9.66e-31 | 117.0 | |
| Lomi8g00275 | . | 37 | 356 | GA20OX gene family | AT4G25420 | 33.436 | 4.59e-55 | 183.0 | |
| Lomi8g01685 | . | 36 | 351 | GA20OX gene family | AT1G60980 | 32.923 | 1.36e-42 | 150.0 | |
| Lomi9g01090 | . | 32 | 356 | GA20OX gene family | AT4G25420 | 31.287 | 5.40e-50 | 169.0 | |
| Lomi9g01587 | . | 276 | 379 | GA20OX gene family | AT5G07200 | 57.143 | 2.29e-36 | 125.0 | |
| Lomi9g01588 | . | 44 | 149 | GA20OX gene family | AT1G60980 | 43.396 | 2.93e-23 | 90.5 | |
| Lomi9g01895 | . | 35 | 373 | GA20OX gene family | AT1G60980 | 26.608 | 3.57e-34 | 127.0 | |
| Lomi9g01940 | . | 55 | 358 | GA20OX gene family | AT1G60980 | 32.907 | 2.82e-34 | 127.0 | |
| Lomi9g01983 | . | 24 | 373 | GA20OX gene family | AT4G25420 | 70.739 | 0.0 | 520.0 | |
| Lomi9g02046 | . | 38 | 369 | GA20OX gene family | AT4G25420 | 32.362 | 7.58e-58 | 189.0 | |
| Lomi10g00070 | . | 59 | 361 | GA20OX gene family | AT4G25420 | 33.117 | 3.85e-40 | 142.0 | |
| Lomi10g01992 | . | 10 | 373 | GA20OX gene family | AT4G25420 | 60.87 | 8.87e-161 | 454.0 | |
| Lomi10g02061 | . | 36 | 351 | GA20OX gene family | AT1G60980 | 32.615 | 1.07e-41 | 147.0 | |
| Lomi10g02487 | . | 55 | 357 | GA20OX gene family | AT4G25420 | 31.19 | 4.71e-42 | 148.0 | |
| Lomi10g02833 | . | 245 | 354 | GA20OX gene family | AT5G51810 | 36.522 | 2.09e-13 | 63.9 | |
| Lomi11g00079 | ACH,LST | 31 | 340 | GA20OX gene family | AT1G60980 | 21.341 | 1.97e-07 | 50.4 | |
| Lomi11g00118 | . | 36 | 356 | GA20OX gene family | AT1G60980 | 32.931 | 6.34e-47 | 162.0 | |
| Lomi11g00385 | . | 58 | 361 | GA20OX gene family | AT4G25420 | 35.161 | 3.36e-46 | 159.0 | |
| Lomi11g00917 | . | 40 | 356 | GA20OX gene family | AT4G25420 | 34.049 | 2.60e-56 | 186.0 | |
| Lomi11g01001 | . | 25 | 373 | GA20OX gene family | AT4G25420 | 67.806 | 1.81e-180 | 503.0 | |
| Lomi11g01394 | . | 42 | 348 | GA20OX gene family | AT1G44090 | 30.323 | 3.98e-44 | 154.0 | |
| Lomi11g01528 | . | 189 | 369 | GA20OX gene family | AT4G25420 | 43.646 | 1.25e-43 | 150.0 | |
| Lomi11g01529 | . | 40 | 369 | GA20OX gene family | AT4G25420 | 34.234 | 2.82e-57 | 189.0 | |
| Lomi11g01907 | . | 57 | 369 | GA20OX gene family | AT5G07200 | 32.099 | 7.13e-46 | 159.0 | |
| Lomi12g00303 | . | 40 | 371 | GA20OX gene family | AT4G25420 | 32.743 | 6.81e-59 | 192.0 | |
| Lomi12g00367 | . | 1 | 373 | GA20OX gene family | AT4G25420 | 66.667 | 0.0 | 516.0 | |
| Lomi12g00645 | . | 15 | 379 | GA20OX gene family | AT5G07200 | 46.739 | 2.74e-117 | 343.0 | |
| Lomi12g01151 | . | 32 | 356 | GA20OX gene family | AT4G25420 | 33.333 | 7.65e-52 | 174.0 | |
| Lomi12g01800 | . | 63 | 355 | GA20OX gene family | AT1G44090 | 29.73 | 3.55e-30 | 115.0 | |
| Lomi12g01801 | . | 246 | 328 | GA20OX gene family | AT5G07200 | 38.554 | 2.91e-14 | 67.0 | |
| Lomi12g01802 | . | 63 | 355 | GA20OX gene family | AT1G44090 | 29.831 | 8.44e-31 | 117.0 | |
| Lomi12g01953 | . | 42 | 350 | GA20OX gene family | AT5G51810 | 32.198 | 2.04e-41 | 146.0 | |
| Lomi12g02148 | ACH | 61 | 361 | GA20OX gene family | AT4G25420 | 24.342 | 1.08e-23 | 98.2 | |
| Lomi13g01148 | . | 59 | 353 | GA20OX gene family | AT4G25420 | 29.73 | 8.55e-42 | 148.0 | |
| Lomi13g02011 | . | 24 | 330 | GA20OX gene family | AT4G25420 | 31.861 | 1.57e-41 | 147.0 | |
| Lomi13g02012 | . | 187 | 357 | GA20OX gene family | AT5G51810 | 34.483 | 3.31e-27 | 103.0 | |
| Lomi14g00370 | . | 56 | 333 | GA20OX gene family | AT4G25420 | 34.035 | 9.63e-45 | 155.0 | |
| Lomi14g00697 | . | 42 | 367 | GA20OX gene family | AT5G51810 | 31.532 | 5.95e-41 | 145.0 | |
| Lomi14g00934 | . | 63 | 329 | GA20OX gene family | AT5G51810 | 31.985 | 1.38e-22 | 94.7 |