Gene detail

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Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lomi2g04375	ATGGCTTCTTATTCTACTACTTCTACTCCTAATTGGAGTAACCCTAAAACCAAATTCATATCATCTTCAAAACATGGATTCAATTCATCTTCATCTTCTTCAATTTCTTTCTCAAAAAGATCAAATTCAATTTCTTGTGCACTTCAAACACCTTCAATTCTTCAAATTCCCAAACAAGTTGTGTCGAAAACCTCGACCGCAACAATCGAATTACCGGGTTCTTCTTCGAATTCAACTGGGGTGTATAAAAATTTGAACTTTATTCAAAAGTTTGCAGCAATGGCATTGGATGCAATTGAAGAAGGAATTATAGCTAAAGAAAAGTTACACCCTTTACCAAAAACAGCAGACCCAGAAATTCAAATCGCCGGGAATTTCTCTCCGGTACCGGAACAGCCCGTACGAAAATCTTTAACGGTCGCCGGAAAAATCCCTCAACATATTGAAGGTGTTTATTTACGTAACGGAGCTAACCCATTATTCGAACCAACCTCCGGCCACCATTTGTTTGACGGCGATGGGATGATTTACGCTGTGAAGTTCGAAAATGGGCAAGCGAGTTACGCTTGTCGCTTTACTGAAACCCAACGGCTCGTTCAAGAACGAGCCATTGGTAAACCGGTTTTTCCTAAAGCAATTGGGGAATTACATGGGCATTCCGGAATTGCGAAACTGTTATTGTTTTATGCACGTGGTTTGTGTGGTGTGCTTGACCACACACACGGCATTGGTGTAGCTAACGCCGGTTTAGTTTATTTTAACAACCGTCTGTTAGCTATGTCAGAAGACGATTTGCCTTATCATGTGCGTGTTACACCTTCTGGCGATTTGAAAACTGCCGGAAGGTATACCTTTGATGGTCAACTAGAGTCAACCATGATCGCTCACCCGAAAGTGGACCCAGTTTCTGGTGAGCTTTTTGCTCTAAGTTATGACGTCATCAAAAAACCATACTTGAAGTATTTTCGGTTTTCACCGGATGGGAAGAAATCACAGGATGTCGCAATCGAATTGGAGAAGCCGACTATGGTTCATGATTTTGCAATCACGGAGAATTTTGTTGTTGTTCCTGATCACCAAGTTGTTTTCAAGATGTCGGAAATGATCACCGGCGGGTCACCGGTGGTATACGATAAAGAAAAGGTATCACGTTTTGGTGTTTTGGACAAATATGCCGAAAACGGGTCGGGTATTAAATGGGTCGAAGTTCCTGATTGTTTTTGCTTTCATCTATGGAATGCGTGGGAAGAACCCGAAAATGACGAGGTTGTTGTGATCGGGTCATGCATGACTCCTGCGGATTCCATTTTTAATGAATCTAACGAGGAGTTAAAATCCGTTTTATCCGAAATCCGTCTTAACATAAAAACCGGGAAATCCACTTGTCATGCGATTATTGCACCGGAAAATGATGTAAATTTGGAAGCTGGAATGGTGAACAAAAACCTTCTAGGTCGAAAAACTCAATACGCGTACCTAGCCATAGCTGAGCCATGGCCCAAGGTTTCTGGTTTTGCCAAAGTCGATCTTTCGACTGGCGAAACCAAAAAGTTTATCTATGGGGAAGAGAAATATGGCGGTGAGCCGTTATTTCTTCCCCGTGATGTGAACTCTAGTAACGAAGATGATGGTCATATTTTAGCTTTTGTTCATGATGAAAAAACATGGAAGTCAGAGTTACAAATTGTGGATGCAAAGACGTTAGAGTTAACGGCAACAGTTAAGTTGCCGTCGAGGGTTCCATACGGGTTTCACGGAACTTTTATTAGCGCCAAAGATTTGGCAACACAGGCATGA	1797	41.85	MASYSTTSTPNWSNPKTKFISSSKHGFNSSSSSSISFSKRSNSISCALQTPSILQIPKQVVSKTSTATIELPGSSSNSTGVYKNLNFIQKFAAMALDAIEEGIIAKEKLHPLPKTADPEIQIAGNFSPVPEQPVRKSLTVAGKIPQHIEGVYLRNGANPLFEPTSGHHLFDGDGMIYAVKFENGQASYACRFTETQRLVQERAIGKPVFPKAIGELHGHSGIAKLLLFYARGLCGVLDHTHGIGVANAGLVYFNNRLLAMSEDDLPYHVRVTPSGDLKTAGRYTFDGQLESTMIAHPKVDPVSGELFALSYDVIKKPYLKYFRFSPDGKKSQDVAIELEKPTMVHDFAITENFVVVPDHQVVFKMSEMITGGSPVVYDKEKVSRFGVLDKYAENGSGIKWVEVPDCFCFHLWNAWEEPENDEVVVIGSCMTPADSIFNESNEELKSVLSEIRLNIKTGKSTCHAIIAPENDVNLEAGMVNKNLLGRKTQYAYLAIAEPWPKVSGFAKVDLSTGETKKFIYGEEKYGGEPLFLPRDVNSSNEDDGHILAFVHDEKTWKSELQIVDAKTLELTATVKLPSRVPYGFHGTFISAKDLATQA	598

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lomi2g04375	598	Pfam	Retinal pigment epithelial membrane protein	130	590	IPR004294	GO:0016702(InterPro)
	Lomi2g04375	598	PANTHER	BETA-CAROTENE DIOXYGENASE	110	589	IPR004294	GO:0009570(PANTHER)\|GO:0010436(PANTHER)\|GO:0016121(PANTHER)\|GO:0016702(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lomi2g04375	K09840	9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51]

Event-related genes

Select	Gene_1	Gene_2	Event_name
	122932	Lomi2g04375	Lomi4g02555
	324079	Lomi2g04375	Lomi1g00282
	333398	Lomi1g00282	Lomi2g04375

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Lomi	Lomi-Chr1:38169924	Lomi2g04375	Lomi-Chr2:49128355	dispersed
	Lomi	Lomi-Chr2:49128355	Lomi8g01582	Lomi-Chr8:16899602	dispersed
	Lomi	Lomi-Chr1:2381416	Lomi2g04375	Lomi-Chr2:49128355	wgd
	Lomi	Lomi-Chr2:49128355	Lomi3g00821	Lomi-Chr3:6655090	wgd
	Lomi	Lomi-Chr2:49128355	Lomi4g02555	Lomi-Chr4:33180421	wgd