AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04376 ATGGGGAGAAAACGTGAACGAATTCAAAATCCTCAACCTTTTTTAGCCGATGACACCAACAAATCTGCCTCCAAAAAACGCACCAAAAAACCGGCTAAACAACATCAACTTGAAGAAACGCTTATATCTGAAGGAATGAGTTCGAAGATATTGAAGGAAGCTTTAATTCAACAAAAGGAGATTCAGGAAGAAACAGATGCTGAAAACCCTAATAACATTGTTTTCCCTGAAGAACCTGTTACTCAAGCCCAAGCTGACGATGACGATGACGATGTTGATAATTTTGCTGGTTTTTCTGACAATCATAGTCAGTTTGGTGGTTATGAGGAAGAAATTAACGAGGATGAAGAGAAGTTACTGGAAGCTTTCTTTTCCAGGGATGCACGACCACAACGAACTTTAGCTGACATCATTGTGGAGAAGATCAAAGAAAAAGATCAATTGCCTTCAGGTTTATCTGCAGGAACTCAACCCGTGCCAAAGTTGGATGATTCCATCATAGAAATATACAAGAGTGTTGGAGAAATTTTCAAGAAGTATACTTCAGGAAAATTGCCATTAGCCTTTAAAAGCATACCCGCCAAGCAACACTGGGAAGAACTTCTGTACTTGACAGAACCAGAAAAATGGTCGCCTAATGCAGTGTACCAAGCCACCAGAATACTTGCTTCAAATATGAGTTCAAAGAAAGTGGAGAGGTTTTACAAATTCATTTTACTCCCTCGTATTAGACAAGATATAAGGAAGAACAAAAAACTCCATTTTGCATTGTATCAAGCTTTGAAAAAGGCTGTATATAAACCAGCTGCCTTCAATAAAGGAATCTTGTTTCCGCTATGTGAGTCAAGGACTTGCAATTTAAGAGAGGCAGTTATTATTGGAAGCATCCTTCAAAAAGTATCTATTCCGCCACTTCATTCCAGTCTTGCGTTAATGAAACTTGCGGAAATGGAGTATGGTGGCACGACAAGCTATTTTATAAAGCTGTTAGTTGAGAAGAAATATGCTTTGCCCTATCGAGTTATTGATGCAATGGTTGCACATTATATGAGATTTTGTGAGGACTCCAGGGATATGCCTGTGATCTGGCATCAGTCACTTCTTGCATTCATGGAAAGATACAAACACGAACTGACAAAGGAACAAAAAGATGATATCAATTATCTTGTGAAGAAGCAGAGACATAAATTGGTCACACCTGAAATATTAAGGGAGCTGAATAACAGCCGTAACCGTGGGGAGAAGGAGGATGACCTCATGTCAATTTCTTCCCCTATTTCGGTGATCAACAAAACTATAGAGGAAGATAGATTTGATATCCCAGATGTCCCCATGGAAGAAGATTAA 1347 38.98 MGRKRERIQNPQPFLADDTNKSASKKRTKKPAKQHQLEETLISEGMSSKILKEALIQQKEIQEETDAENPNNIVFPEEPVTQAQADDDDDDVDNFAGFSDNHSQFGGYEEEINEDEEKLLEAFFSRDARPQRTLADIIVEKIKEKDQLPSGLSAGTQPVPKLDDSIIEIYKSVGEIFKKYTSGKLPLAFKSIPAKQHWEELLYLTEPEKWSPNAVYQATRILASNMSSKKVERFYKFILLPRIRQDIRKNKKLHFALYQALKKAVYKPAAFNKGILFPLCESRTCNLREAVIIGSILQKVSIPPLHSSLALMKLAEMEYGGTTSYFIKLLVEKKYALPYRVIDAMVAHYMRFCEDSRDMPVIWHQSLLAFMERYKHELTKEQKDDINYLVKKQRHKLVTPEILRELNNSRNRGEKEDDLMSISSPISVINKTIEEDRFDIPDVPMEED 448
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04376 448 FunFam Bystin (51.6 kD)-like 183 400 - -
Lomi2g04376 448 MobiDBLite consensus disorder prediction 1 39 - -
Lomi2g04376 448 Pfam Bystin 130 415 IPR007955 -
Lomi2g04376 448 Gene3D - 177 398 - -
Lomi2g04376 448 PANTHER BYSTIN 2 448 IPR007955 GO:0005730(PANTHER)|GO:0005737(PANTHER)|GO:0006364(PANTHER)|GO:0030515(PANTHER)|GO:0030688(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04376 K14797 essential nuclear protein 1
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Event-related genes

Select Gene_1 Gene_2 Event_name
324078 Lomi2g04376 Lomi1g00281
333399 Lomi1g00281 Lomi2g04376
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:2359129 Lomi2g04376 Lomi-Chr2:49150190 wgd