AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lomi2g04378 | ATGGAGGTAACAAATGTGACCGAGTATCAGGCAATTGCAAAAGAGAAGTTGCCAAAGATGATCTATGACTACTATGCATCTGGTGCTGAGGACCAATGGACTCTAGAAGAGAACAGAAATGCTTTTGCAAGAATCTTGTTTAGGCCCCGTATTCTTATTGACGTGAGCAAGATAGACATGACCACAACGGTTTTGGGATTTAAATTATCTATGCCCATAATGATCGCCCCAACAGCTATGCAAAAGATGGCTCACCCTGAAGGTGAATATGCAACAGCTAGAGCTGCATCTGCAGCTGGGACTATTATGACACTTTCATCATGGGCGACATCTAGTGTTGAGGAAGTTGCATCAACAGGACCTGGAATCCGCTTCTTCCAGCTTTACGTTTACAAGGACCGCAATGTTGTGGCTCAACTTGTGAGAAGAGCTGAACGAGCCGGTTTCAAAGCCATAGCTCTTACAGTTGACACGCCAAGACTAGGACGTCGCGAAGCTGACATCAAAAACAGGTTTACTTTACCCCCGTTTTTGACATTGAAGAACTTTGAGGGTCTGGACCTTGGCAAGATGGATGAAGGTAACGACTCTGGATTAGCTTCTTATGTTGCTGGTCAGATCGACCGCACTTTGAGCTGGAAGGATGTGAAGTGGCTGCAGACCATCACTACAATGCCAATCCTTGTGAAGGGTGTGATCACTGCTGAGGATACAAGGTTGGCTATTCAAGCGGGAGCTGCGGGTATAATCGTATCCAACCATGGAGCACGTCAACTTGATTACGTCCCTGCCACTATCATGGCTTTAGAGGAGGTTGTGAAAGCCGCACAAGGCCGTGTACCTGTATTCTTGGATGGTGGTGTGCGTCGTGGTACAGATGTTTTCAAAGCATTGGCACTTGGAGCTTCTGGCATATTTATTGGACGACCTGTGGTGTTTTCATTGGCTGCTGAAGGGGAAGCTGGAGTGAGGAAGGTGCTTCAAATGTTACGTGATGAATTTGAGCTAACCATGGCATTAAGTGGTTGTACCTCGCTCAAACAGATCACCCGGGACCACATTGTGACCGAGTGGGACGCTCCAAGGGCTCGTCCTGCACCCAGGTTATAG | 1110 | 47.39 | MEVTNVTEYQAIAKEKLPKMIYDYYASGAEDQWTLEENRNAFARILFRPRILIDVSKIDMTTTVLGFKLSMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFEGLDLGKMDEGNDSGLASYVAGQIDRTLSWKDVKWLQTITTMPILVKGVITAEDTRLAIQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCTSLKQITRDHIVTEWDAPRARPAPRL | 369 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lomi2g04378 | 369 | ProSitePatterns | FMN-dependent alpha-hydroxy acid dehydrogenases active site. | 252 | 258 | IPR008259 | GO:0016491(InterPro) | |
| Lomi2g04378 | 369 | Pfam | FMN-dependent dehydrogenase | 13 | 355 | IPR000262 | GO:0016491(InterPro) | |
| Lomi2g04378 | 369 | CDD | alpha-hydroxyacid-oxid-FMN | 8 | 351 | IPR012133 | GO:0010181(InterPro)|GO:0016491(InterPro) | |
| Lomi2g04378 | 369 | SUPERFAMILY | FMN-linked oxidoreductases | 2 | 356 | - | - | |
| Lomi2g04378 | 369 | ProSiteProfiles | FMN-dependent alpha-hydroxy acid dehydrogenase domain profile. | 1 | 359 | IPR037396 | - | |
| Lomi2g04378 | 369 | Gene3D | Aldolase class I | 1 | 369 | IPR013785 | - | |
| Lomi2g04378 | 369 | PIRSF | Al-hdrx-acd-dh | 1 | 359 | IPR012133 | GO:0010181(InterPro)|GO:0016491(InterPro) | |
| Lomi2g04378 | 369 | FunFam | peroxisomal (S)-2-hydroxy-acid oxidase GLO1 | 1 | 366 | - | - | |
| Lomi2g04378 | 369 | PANTHER | S -2-HYDROXY-ACID OXIDASE-RELATED | 2 | 353 | - | GO:0005777(PANTHER)|GO:0008891(PANTHER) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lomi2g04378 | K11517 | (S)-2-hydroxy-acid oxidase [EC:1.1.3.15] | ||||
| Lomi2g04378 | K00101 | L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 118736 | Lomi11g01955 | Lomi2g04378 | |
| 122933 | Lomi2g04378 | Lomi4g02557 | |
| 122934 | Lomi2g04378 | Lomi5g02129 | |
| 324076 | Lomi2g04378 | Lomi1g00279 | |
| 333401 | Lomi1g00279 | Lomi2g04378 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lomi | Lomi-Chr10:15699829 | Lomi2g04378 | Lomi-Chr2:49163415 | dispersed | |
| Lomi | Lomi-Chr1:2345257 | Lomi2g04378 | Lomi-Chr2:49163415 | wgd | |
| Lomi | Lomi-Chr11:27982786 | Lomi2g04378 | Lomi-Chr2:49163415 | wgd | |
| Lomi | Lomi-Chr2:49163415 | Lomi3g00820 | Lomi-Chr3:6634984 | wgd | |
| Lomi | Lomi-Chr2:49163415 | Lomi4g02557 | Lomi-Chr4:33201819 | wgd | |
| Lomi | Lomi-Chr2:49163415 | Lomi5g02129 | Lomi-Chr5:31943171 | wgd |