AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04382 ATGGTGGAAGTTGACAGCAAATCAAACGAAGCTAATAATGGCAATGAAATCAAAATTAGATACAGCAACACGAAAAATAGATGGAAGCCGTATGGAATTATTGGAGCTGCAATCGCAATTTTAGTTGCTATATATCTTAATCCGTGGCGTCATTCTCTCAATAAAACCTACCTCTGTTCTCAGGATACTTGTAAACATCCACGCATCGTTGAGGACTGCTGTTGTGATTATGAGAGCGTTGATGACGTTAATGGAGAAATTTTACATCCCTTGTTACAAGAGCTTGTTAAGACTCCGTTCTTCAGATACTTCAAGCTTAAGTTATGGTGTGATTGCCCCTTCTGGCCTGATGATGGAATGTGCCGCCTGCGCGATTGCAGTGTATGCGAGTGTCCAGAACATGAATTCCCAGAATCTTTCAAGAGGCCATCACTCCATGTTCTTCCGCGAGATGACCCTGTATGTCAAGAGGGAAAGCCAGAGGCTACTGTTGACCGTACTCTAGATGCTAAGTCATTTAAAGGGTGGGTAGAAATAGACAATCCATGGATTCATGACGATGAAACTGATAATGGTGAAATGACATATGTGAATTTGCAACTGAACCCTGAACGTCATACGGGTTACTCAGGGCCATCAGCAAGAAGAATATGGGATGCTATATATTCAGAAAATTGCCCAAGATATGCATATGGAGAGACGTGCCCAGAAAAGAAAGTACTATACAAGCTAATATCTGGTCTGCATTCCTCAATTTCGATCCACATAGCTGCTGATTATCTCCTTGATGAGACTGCCAATCAGTGGGGTCCTAATCTTGAATTGATGCATGATCGTGTCTTGAAACATCCAGATCGCGTGGAAAATTTGTACTTCACTTTCCTATTTGTTCTTAGAGCCGTGACAAAAGCGGCTGCTTACTTGGATCAGGCTGAGTATGACTCGGGTAACCAAGTGGAGGATCTGCGAGCCCAATTGTTGATTCGACATTTGGTTCACAATTCCAAACTGCAAGCTGCATGTGCTCTTCCGTTTAATGAGGCTGAACTTTGGCAAGGCCATGGTGGACCAATATTCAGGCGACAAATCCAAGATCAGTTTCGAAACATCAGCAGTGCACTGATGGACTGTGTCGGGTGTGAGAAGTGTCGTCTTTGGGGAAAACTTCAGGTTCTTGGCCTTGGAACTGCATTAAAAATTCTCTTCTCTGTTGATGATCAAGGAAACCCAGATCCACAACTGGAATTACAAAGAAATGAAGTGATTGCCCTAATTAATCTACTAAATCGGCTGTCAGAATCTCTTATATATGTCACTAACATGAGAGATAAGGTTGCTATACAGCCTCCTGATAGAGATATCAATTTATATCACAGACGATGGGGATCACTGATAGCTCATTGGTGGAATAACCTAGCAAGAACTAACTGA 1431 42.28 MVEVDSKSNEANNGNEIKIRYSNTKNRWKPYGIIGAAIAILVAIYLNPWRHSLNKTYLCSQDTCKHPRIVEDCCCDYESVDDVNGEILHPLLQELVKTPFFRYFKLKLWCDCPFWPDDGMCRLRDCSVCECPEHEFPESFKRPSLHVLPRDDPVCQEGKPEATVDRTLDAKSFKGWVEIDNPWIHDDETDNGEMTYVNLQLNPERHTGYSGPSARRIWDAIYSENCPRYAYGETCPEKKVLYKLISGLHSSISIHIAADYLLDETANQWGPNLELMHDRVLKHPDRVENLYFTFLFVLRAVTKAAAYLDQAEYDSGNQVEDLRAQLLIRHLVHNSKLQAACALPFNEAELWQGHGGPIFRRQIQDQFRNISSALMDCVGCEKCRLWGKLQVLGLGTALKILFSVDDQGNPDPQLELQRNEVIALINLLNRLSESLIYVTNMRDKVAIQPPDRDINLYHRRWGSLIAHWWNNLARTN 476
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04382 476 SUPERFAMILY ERO1-like 75 445 IPR037192 -
Lomi2g04382 476 PANTHER ERO1-RELATED 40 444 IPR007266 GO:0005783(InterPro)|GO:0005789(PANTHER)|GO:0015035(PANTHER)|GO:0015035(InterPro)|GO:0016972(InterPro)|GO:0034975(InterPro)|GO:0034975(PANTHER)|GO:0071949(InterPro)
Lomi2g04382 476 Pfam Endoplasmic Reticulum Oxidoreductin 1 (ERO1) 88 436 IPR007266 GO:0005783(InterPro)|GO:0015035(InterPro)|GO:0016972(InterPro)|GO:0034975(InterPro)|GO:0071949(InterPro)
Lomi2g04382 476 PIRSF ERO 33 468 IPR007266 GO:0005783(InterPro)|GO:0015035(InterPro)|GO:0016972(InterPro)|GO:0034975(InterPro)|GO:0071949(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04382 K10950 ERO1-like protein alpha [EC:1.8.4.-]
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Event-related genes

Select Gene_1 Gene_2 Event_name
118740 Lomi11g01957 Lomi2g04382
122938 Lomi2g04382 Lomi5g02131
324073 Lomi2g04382 Lomi1g00274
333404 Lomi1g00274 Lomi2g04382
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr2:49195575 Lomi4g02403 Lomi-Chr4:31945698 dispersed
Lomi Lomi-Chr1:2303853 Lomi2g04382 Lomi-Chr2:49195575 wgd
Lomi Lomi-Chr11:27992729 Lomi2g04382 Lomi-Chr2:49195575 wgd
Lomi Lomi-Chr2:49195575 Lomi5g02131 Lomi-Chr5:31951004 wgd