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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04385 ATGAGTGATCACAAAGTAGAAAAGAGTATTGTAGCAACCCCTGATCAAATAGGATCATCAAATAATCAAGAAGAAGATAAGTCATCTGGCATTCGAACGGTGGAAACGTTGTTGAGGTTGTTTCCGGTGGGGTTATGTGTGGCTGGATTTGTTGTCATGATTAAAGATTCCGAGTCTAATGAATATGGATCTTTATCTTACTCGAACATCACCGCTTTCAGGTTTTTGGTGCATGCTAATGGAATATGTGCTGGTTATTCGCTACTCTCGGCTGCTTTCACAGCAATACCTCGCCCTGTAACCATGCCTCGAGCCTGGACCTTGTTTCTTCTTGATCAGGTTTTGACATACTTGATACTGGCTGCTGGTGCGGTGGCAACCGAGGTCGCGTTTCTGACATACAAAGGTGACGTGGCGGTGACGTGGAGTGAGGTCTGTGGGACCTACGGCCACTTCTGCAAACAAGCGACAGCATCAATCATCATCACTTTTGTCGTGGTGCTTTGTTACATTTCACTGTCACTCATATCATCGTATAGGCTATTCAGCAAGTATGATGCACCTGTTGGATACGATAACAAAGGAATCGAGATCGTTGACTTTGGGAACTAA 612 44.61 MSDHKVEKSIVATPDQIGSSNNQEEDKSSGIRTVETLLRLFPVGLCVAGFVVMIKDSESNEYGSLSYSNITAFRFLVHANGICAGYSLLSAAFTAIPRPVTMPRAWTLFLLDQVLTYLILAAGAVATEVAFLTYKGDVAVTWSEVCGTYGHFCKQATASIIITFVVVLCYISLSLISSYRLFSKYDAPVGYDNKGIEIVDFGN 203
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04385 203 PANTHER CASP-LIKE PROTEIN 4A4 26 183 - -
Lomi2g04385 203 MobiDBLite consensus disorder prediction 1 28 - -
Lomi2g04385 203 MobiDBLite consensus disorder prediction 13 27 - -
Lomi2g04385 203 Pfam Casparian strip membrane protein domain 29 169 IPR006702 -
Lomi2g04385 203 NCBIfam plant integral membrane protein TIGR01569 38 179 IPR006459 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04385 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
324070 Lomi2g04385 Lomi1g00271
333407 Lomi1g00271 Lomi2g04385
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr2:49218068 Lomi7g00253 Lomi-Chr7:2486872 dispersed
Lomi Lomi-Chr1:2281464 Lomi2g04385 Lomi-Chr2:49218068 wgd