AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04386 ATGACCTTATCTACTTCAAATCTGAACCATTCAGTTAAGTTGTCACGCCGATTTTCGGTTCACAAAACACATCGATGTACATGTAAATTCACTAGAATAAATGCATCACTTGATTTAACTGAAGATAATGTCAAACAAGTTCTAGATGATGCCAGAACAACAAAGTTTTCACACTTATTTGATACATCTGTTGGAATGACAGGAGTTGCCGAATTAGCTGAAGTCGATGGACCGTTTGTGAAGATTAGGCTAAAAGGTCGATTTTGGCATGAACGTTCGCTCATATTAGCGAGACTTGGGAACTATCTGAAAGAAAGGATTCCAGAGATATTGGAGGTGGATATCGAAGATGAGAAGCAACTAGACGACAGCCCTGAAAACTTCTAA 387 38.5 MTLSTSNLNHSVKLSRRFSVHKTHRCTCKFTRINASLDLTEDNVKQVLDDARTTKFSHLFDTSVGMTGVAELAEVDGPFVKIRLKGRFWHERSLILARLGNYLKERIPEILEVDIEDEKQLDDSPENF 128
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04386 128 PANTHER OS09G0481800 PROTEIN 6 128 - -
Lomi2g04386 128 Gene3D - 36 115 IPR034904 -
Lomi2g04386 128 SUPERFAMILY Fe-S cluster assembly (FSCA) domain-like 68 114 IPR034904 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04386 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
324069 Lomi2g04386 Lomi1g00270
333408 Lomi1g00270 Lomi2g04386
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:2278027 Lomi2g04386 Lomi-Chr2:49222923 wgd