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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04392 ATGGCCAAGAAAAAGATCGTGGTTAAAGTTACGATGGAGACAGAAAAGAAGACTCGTAAGGCTATGACAGTTGCAGCTAGTATCCGCGGAGTGGATTCCGTGGCTCTTGTGGGATCAAATAAAGAACAAATAGCAGTAACTGGAGAAGGAATTGACTCGGTTGAACTAACAACGTTATTAAGAAAAAAAGTCGGTTCAACAGACCTGCTAAGTGTTGGTTCAGTCGAAGAGAAGAAACCGGCTAAGCCGACTAATCAAAAGGAGGTCAAGGAGATACCGATGCGGTTTGAGTATGGTTATCCCCAACACTATTATGGTCATAGCATGCCATTACAAGTTGTCCATGAAGTTCCTTCCAATTCTTGCAGTATCTTGTGA 378 42.59 MAKKKIVVKVTMETEKKTRKAMTVAASIRGVDSVALVGSNKEQIAVTGEGIDSVELTTLLRKKVGSTDLLSVGSVEEKKPAKPTNQKEVKEIPMRFEYGYPQHYYGHSMPLQVVHEVPSNSCSIL 125
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04392 125 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 47 4 119 IPR042885 -
Lomi2g04392 125 Gene3D - 1 78 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04392 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:2220912 Lomi2g04392 Lomi-Chr2:49263579 dispersed
Lomi Lomi-Chr2:49263579 Lomi2g04396 Lomi-Chr2:49278492 dispersed
Lomi Lomi-Chr2:49263579 Lomi2g04393 Lomi-Chr2:49268424 tandem
Lomi Lomi-Chr1:2199657 Lomi2g04392 Lomi-Chr2:49263579 wgd