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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04395 ATGGCAAAGCAAAAGATCGTCGTGAAAGTGACAATGTGCAACGAGAAGACATCTCGTAAGGCTCTTAAGATCGCCGTTAGTGTATCTGGAGTTGAGTCGGTGTCTTTCATTGAATCAGATAAAGACCAGATAGCGGTGACCGGAGAAGGAATTGATTCAGTTGCATTGGCGAGGTTACTAAGAAAACGTGTAGGATATGCGGAGTTACTTAGTGTCGGTCTTGTGGAAGAAAAGAAACCCGAACCTAAAGAGGAAACAAATCCCACGATAGTGCCGATACAAATGAACCCTTACCCATATTTCTACTATCATGGCTGTGGATGGCCTTACTGA 333 43.84 MAKQKIVVKVTMCNEKTSRKALKIAVSVSGVESVSFIESDKDQIAVTGEGIDSVALARLLRKRVGYAELLSVGLVEEKKPEPKEETNPTIVPIQMNPYPYFYYHGCGWPY 110
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04395 110 ProSiteProfiles Heavy-metal-associated domain profile. 3 72 IPR006121 GO:0046872(InterPro)
Lomi2g04395 110 PANTHER OS04G0464100 PROTEIN 4 87 IPR044296 -
Lomi2g04395 110 Gene3D - 1 78 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04395 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
333411 Lomi1g00261 Lomi2g04395
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr2:49268424 Lomi2g04395 Lomi-Chr2:49275469 dispersed
Lomi Lomi-Chr2:49271373 Lomi2g04395 Lomi-Chr2:49275469 tandem
Lomi Lomi-Chr2:49275469 Lomi2g04396 Lomi-Chr2:49278492 tandem