AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04396 ATGGCAAAGCAAAAGATTGTCGTTAAGGTGACCATGAACACCGAGAAGAAAACTCGTAAGGCTTTGAGGATCGCTGTTAGTCTCTGTGGAGTCGAGTCAGCATCATTTGTTGAACCAAATAAAGACCAGATAGCGGTGACCGGAGAAGGAATTGACTCGGTCAAGTTAGCGACCCTGCTAAGGAAAAGTGTGGGATACACTGAGCTAGTGAGTGTTGGTCCCGTGGAGGCAAAAAAGGAAACTACGGAAACGAACGCCGCTGAGATGCTGCAAATTAATCCTTATCAGTATTATTATAGTTACGATTATAATGGCTACGGTATGCCGTACTACTATGTGTAA 342 44.15 MAKQKIVVKVTMNTEKKTRKALRIAVSLCGVESASFVEPNKDQIAVTGEGIDSVKLATLLRKSVGYTELVSVGPVEAKKETTETNAAEMLQINPYQYYYSYDYNGYGMPYYYV 113
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04396 113 PANTHER OS04G0464100 PROTEIN 4 86 IPR044296 -
Lomi2g04396 113 Gene3D - 1 77 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04396 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
324066 Lomi2g04396 Lomi1g00261
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:2199657 Lomi2g04396 Lomi-Chr2:49278492 dispersed
Lomi Lomi-Chr2:49263579 Lomi2g04396 Lomi-Chr2:49278492 dispersed
Lomi Lomi-Chr2:49271373 Lomi2g04396 Lomi-Chr2:49278492 dispersed
Lomi Lomi-Chr2:49275469 Lomi2g04396 Lomi-Chr2:49278492 tandem