Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lomi2g04412	ATGGACGGCAGCAGATCCAATCTTACTTGTATTCGCGCTCAACAGTCTGTTACAAAGGAGGGGCCTTTAATAGCTACACAATCTAGTGATTCATTAGTCGAAGAACTAAAATGTAAAGATTGGGAAATTGGGGTTTTAAAAGACGAATTAGCTGCGACTCAAGGGATTCGAATAAGAAGACGACAGCCAACAGGGCCGCCATTGCAGTATGTTGGACCTTTAGAGTTTCTTTTACAGAATGAAGGGGATAGTCCTCGGAACATATTAGAGGATATTGTATGGAGCAAAGATGTAGAAGTTACTGAGATGAAAGAGAAATTTCCAGTAAATTTGTTAAAAAAGGCGCTTGGCAATGCACCTCCTTCTAGAGATTTTATTGGAGCTCTTAAGGGATCGTATTTACGAACAGGATTGCCTGGTTTAATTGCTGAAGTGAAAAAGGCTTCACCAAGTAGAGGAGTTCTAAGGGAAGATTTTAATCCTGTTGAAGTAGCAAAAGCTTATGAGAAAGGTGGAGCCGCATGTCTCAGTGTTTTGACCGATGCAAAATATTTTCAGGGAAGCTTTGAGAATCTAGAGGCTATACGAAAGGCTGGAATCAAGTGCCCTCTATTGTGCAAAGAGTTCATTGTGGACGCATGGCAGCTGTATTATGCGCGAACAAAGGGTGCTGATGCTGTTCTGTTGATTGCAGCTGTTTTAACAGATCTCGACATCAAATATATGCTGAAGATATGCAAAATGATTGGACTAACGGCACTCATTGAGGTACATGATGAGAACGAAATGGATCGTATGCTGGAAATTGATGGAATTGAACTCATTGGCATCAACAACCGCAGCCTTGAAACATTTCTAGTTGATATTAGTAACACAAAGAGGTTGCTTGAAGGTGAGCGCGGGGAGAAGATTAGGCAGAAAGACATTATAGTGGTTGGGGAGTCTGGACTGTTCACTCCTGATGACGTTGCCTATGTTCAAGAAGCTGGCGCTAAAGCAATATTGGTTGGAGAATCAATTGTGAAGCAGAAAGATCCAACAAAAGGAGTTAGAGATCTTTTTGGAAAAGATATATCGGCTTAG	1083	41.27	MDGSRSNLTCIRAQQSVTKEGPLIATQSSDSLVEELKCKDWEIGVLKDELAATQGIRIRRRQPTGPPLQYVGPLEFLLQNEGDSPRNILEDIVWSKDVEVTEMKEKFPVNLLKKALGNAPPSRDFIGALKGSYLRTGLPGLIAEVKKASPSRGVLREDFNPVEVAKAYEKGGAACLSVLTDAKYFQGSFENLEAIRKAGIKCPLLCKEFIVDAWQLYYARTKGADAVLLIAAVLTDLDIKYMLKICKMIGLTALIEVHDENEMDRMLEIDGIELIGINNRSLETFLVDISNTKRLLEGERGEKIRQKDIIVVGESGLFTPDDVAYVQEAGAKAILVGESIVKQKDPTKGVRDLFGKDISA	360

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lomi2g04412	360	Gene3D	Aldolase class I	81	359	IPR013785	-
	Lomi2g04412	360	PANTHER	TRYPTOPHAN BIOSYNTHESIS PROTEIN	29	356	IPR045186	GO:0000162(PANTHER)\|GO:0004425(PANTHER)\|GO:0004425(InterPro)\|GO:0004640(PANTHER)
	Lomi2g04412	360	FunFam	Indole-3-glycerol phosphate synthase chloroplastic	81	359	-	-
	Lomi2g04412	360	SUPERFAMILY	Ribulose-phoshate binding barrel	96	355	IPR011060	-
	Lomi2g04412	360	CDD	IGPS	125	353	IPR013798	GO:0004425(InterPro)
	Lomi2g04412	360	Hamap	Indole-3-glycerol phosphate synthase [trpC].	87	355	IPR013798	GO:0004425(InterPro)
	Lomi2g04412	360	Pfam	Indole-3-glycerol phosphate synthase	89	353	IPR013798	GO:0004425(InterPro)
	Lomi2g04412	360	ProSitePatterns	Indole-3-glycerol phosphate synthase signature.	141	159	IPR001468	GO:0004425(InterPro)\|GO:0006568(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lomi2g04412	K01609	indole-3-glycerol phosphate synthase [EC:4.1.1.48]

Event-related genes

Select	Gene_1	Gene_2	Event_name
	324058	Lomi2g04412	Lomi1g00247
	333419	Lomi1g00247	Lomi2g04412

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Lomi	Lomi-Chr1:2117589	Lomi2g04412	Lomi-Chr2:49395800	wgd
	Lomi	Lomi-Chr2:49395800	Lomi3g00800	Lomi-Chr3:6478229	wgd