Gene detail

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Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lomi2g04415	ATGGCTCCAGCTGCAGTTGCAAATGGTTCTGATAACATTAAACCTAGAGATGTATGTATTGTTGGTGTTGCACGTACACCACTTGGTGGATTTCTTGGTTCTCTTTCGGCTTTACCAGCCACCAAACTTGGGTCCATAGCAATTGAATGTGCTCTAAAGAGGGCAAATGTTGATCCATCACTCGTAGAAGAAGTTTATTTTGGAAATGTTCTCGGTGCTAATTTGGGGCAGGGTCCCGCCAGACAAGCAGCGTTAGGTGCAGGAATCCCAAATACAGTGGTCTCAACATCTGTTAACAAAGTTTGTGCATCAGGGATGAAAGCAACCATGTTGGCAGCACAGAGCATCCAATTGGGTCATAATGATATAGTTGTGGCTGGTGGTATGGAAAGCATGTCTAATGTCCCCAAATATGTTGCAGAAGCAAGGAAGGGATCCAAATTTGGACATGATAGTCTTGTTGATGGAATTTTGAAAGACGGGTTGTGGGATGTTTTCAACGATTTTAAGATGGGAAACTGTGCTGAAATATGTGCAGATACACATGAAATTACAAGAGAACAACAGGATGACTATGCCATTCAAAGCTTTGAACGTGGTATCGCTGCCCGAGATAGTGGTGCCTTTGCATGGGAAATTGCTCCTGTTGAAGTTCCTGGCCCAAGAGGAAGACCATCAACAATTGTTGACAAAGATGATGATTTGGGAAAGTTCGATGCTGCTAAGTTGAGGAAACTGCGCCCAGCTTTTAAGGAAAATGGTGGCAGTGTTACCGCCGGCAATTCATCTGGTATAAATGATGGTGCTGCTGCACTTGTGTTGGTTAGTGGAGAGAAGGCGCTTAAGCTTGGGTTGCATGTGATTGCAAAGGTTTCTGGATATGCTGATGCTGAACAGGCGCCCGAGCTATTTACAACGACCCCAGCCCTGGCCATACCCAAGGCTATTTCAAGAGCTGGATTGGATGCTTCTCAAATAGATTTCTATGAAATCAATGAAGCATTCGCTGTTGTGGCTCTTGCCAACCAGAAATTGCTGGGTTTGGATTCAGCAAAGCTTAATGTACATGGTGGCGGCGTATCATTAGGACATCCTTTAGGTTGCAGTGGTGCACGTATCTTGGTCACTCTTTTGGGGGTTTTGAAGCAGAAAGGCGGCAAGTACGGTGCAGCAGGTGTGTGCAACGGAGGAGGTGGTGCATCGGCGTTCGTAGTTGAACTACTTTAA	1227	45.4	MAPAAVANGSDNIKPRDVCIVGVARTPLGGFLGSLSALPATKLGSIAIECALKRANVDPSLVEEVYFGNVLGANLGQGPARQAALGAGIPNTVVSTSVNKVCASGMKATMLAAQSIQLGHNDIVVAGGMESMSNVPKYVAEARKGSKFGHDSLVDGILKDGLWDVFNDFKMGNCAEICADTHEITREQQDDYAIQSFERGIAARDSGAFAWEIAPVEVPGPRGRPSTIVDKDDDLGKFDAAKLRKLRPAFKENGGSVTAGNSSGINDGAAALVLVSGEKALKLGLHVIAKVSGYADAEQAPELFTTTPALAIPKAISRAGLDASQIDFYEINEAFAVVALANQKLLGLDSAKLNVHGGGVSLGHPLGCSGARILVTLLGVLKQKGGKYGAAGVCNGGGGASAFVVELL	408

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lomi2g04415	408	NCBIfam	acetyl-CoA C-acyltransferase	20	406	IPR002155	GO:0016747(InterPro)
	Lomi2g04415	408	SUPERFAMILY	Thiolase-like	288	407	IPR016039	GO:0016746(InterPro)
	Lomi2g04415	408	PIRSF	Ac-CoA-Ac-transf	12	408	IPR002155	GO:0016747(InterPro)
	Lomi2g04415	408	Pfam	Thiolase, C-terminal domain	286	406	IPR020617	GO:0016747(InterPro)
	Lomi2g04415	408	Pfam	Thiolase, N-terminal domain	18	277	IPR020616	GO:0016747(InterPro)
	Lomi2g04415	408	FunFam	acetyl-CoA acetyltransferase, mitochondrial	13	408	-	-
	Lomi2g04415	408	Gene3D	-	14	407	IPR016039	GO:0016746(InterPro)
	Lomi2g04415	408	SUPERFAMILY	Thiolase-like	17	285	IPR016039	GO:0016746(InterPro)
	Lomi2g04415	408	CDD	thiolase	20	406	IPR002155	GO:0016747(InterPro)
	Lomi2g04415	408	ProSitePatterns	Thiolases active site.	389	402	IPR020610	GO:0016747(InterPro)
	Lomi2g04415	408	PANTHER	ACETYL-COA C-ACYLTRANSFERASE	17	407	-	GO:0003985(PANTHER)\|GO:0005739(PANTHER)\|GO:0006635(PANTHER)
	Lomi2g04415	408	ProSitePatterns	Thiolases signature 2.	354	370	IPR020613	GO:0016747(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lomi2g04415	K00626	acetyl-CoA C-acetyltransferase [EC:2.3.1.9]

Event-related genes

Select	Gene_1	Gene_2	Event_name
	324055	Lomi2g04415	Lomi1g00243
	333422	Lomi1g00243	Lomi2g04415

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Lomi	Lomi-Chr1:37726330	Lomi2g04415	Lomi-Chr2:49418710	dispersed
	Lomi	Lomi-Chr2:16608701	Lomi2g04415	Lomi-Chr2:49418710	dispersed
	Lomi	Lomi-Chr1:2091879	Lomi2g04415	Lomi-Chr2:49418710	wgd
	Lomi	Lomi-Chr2:49418710	Lomi3g00798	Lomi-Chr3:6468964	wgd

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lomi1g00243	LST	1	405	AACT gene family	AT5G47720	77.206	0.0	652.0
	Lomi1g02571	LST	8	405	AACT gene family	AT5G47720	79.397	0.0	663.0
	Lomi2g01789	LST	8	405	AACT gene family	AT5G47720	79.146	0.0	660.0
	Lomi2g04415	LST	1	405	AACT gene family	AT5G47720	76.471	0.0	650.0
	Lomi3g00798	.	8	405	AACT gene family	AT5G47720	76.382	0.0	642.0