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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04417 ATGGAAAATTCGTCAAAGGGTCCGGAAAATGAAGTTGATCAAGTCGATATGCTGAATGCTACTTATGATGGTTATGGAGGTGTCATTGTGAATATTAAAGATGATATGGACGAAAATGTCTTCACCACTTTACTTCAAACATCAATTTCCCAGTGGAGGCTGCTGGAAAAGAAGGGAGTTTGGCTTAAATTGCCACTTGAACTTGTGAATCTTGTTAAGCCTGCAGTAAAGGAAGGATTTTGGTACCATCATGCCGAACCAACATACTTGATGCTCGTGTATTGGATTCCTGAAACTAATAGTACTCTCCCACCAAATGCTTCCCATCGAGTCGGCGTTGCTTCTTTTGTGGTCAACGATAATGGGGAGCTTCTTGTAGTCCAAGAAAAAAGTGGAGTGTTCAAAGGCTCAGGAGTCTGGAAGTTACCAACTGGTACTGTTGAGGAGGGTGAAGATTTAAGTGCAGCTGCAATCAGGGAAGTTAAAGAAGAGGCTGGAATTGATACAGAATTCATGGAAGTCCTTGCATTCAGACAAAGCCACAAGTCATTTTTTAGCAAGTCGGATCTCATGTTTGTGTGTATGCTAAAACCAATATCATTCGATATTGTCAAGCAAGATTCAGAGATTGAAGCAGCACGGTGGATGCCAGTTGAAGAATACGCTAACCAGCCCTTTGTAAAAGAACACAAATCCTTTGACTACATTGCTAAAATATGCATAGCAAAAAAGGATAACAAATATGTTGGCTTCTCTGCATTACCTACATCAACCGCTACATCTGCAAAAAAGAGCTATTTGTATTCGAGTTACCAAGACCAGTAA 825 40.48 MENSSKGPENEVDQVDMLNATYDGYGGVIVNIKDDMDENVFTTLLQTSISQWRLLEKKGVWLKLPLELVNLVKPAVKEGFWYHHAEPTYLMLVYWIPETNSTLPPNASHRVGVASFVVNDNGELLVVQEKSGVFKGSGVWKLPTGTVEEGEDLSAAAIREVKEEAGIDTEFMEVLAFRQSHKSFFSKSDLMFVCMLKPISFDIVKQDSEIEAARWMPVEEYANQPFVKEHKSFDYIAKICIAKKDNKYVGFSALPTSTATSAKKSYLYSSYQDQ 274
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04417 274 ProSiteProfiles Nudix hydrolase domain profile. 108 240 IPR000086 -
Lomi2g04417 274 FunFam nudix hydrolase 2 15 101 - -
Lomi2g04417 274 PANTHER NUDIX HYDROLASE RELATED 6 272 IPR003293 GO:0035529(PANTHER)|GO:0047631(PANTHER)|GO:0051287(PANTHER)
Lomi2g04417 274 SUPERFAMILY Nudix 76 238 IPR015797 -
Lomi2g04417 274 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 90 106 IPR003293 -
Lomi2g04417 274 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 68 86 IPR003293 -
Lomi2g04417 274 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 194 218 IPR003293 -
Lomi2g04417 274 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 106 124 IPR003293 -
Lomi2g04417 274 PRINTS NUDIX hydrolase family signature 140 154 IPR020476 -
Lomi2g04417 274 PRINTS NUDIX hydrolase family signature 154 169 IPR020476 -
Lomi2g04417 274 ProSitePatterns Nudix box signature. 145 166 IPR020084 GO:0016787(InterPro)
Lomi2g04417 274 Gene3D - 15 101 - -
Lomi2g04417 274 Pfam Nudix hydrolase domain 18 96 IPR040618 -
Lomi2g04417 274 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 110 248 - -
Lomi2g04417 274 CDD Nudix-Hydrolase-12 109 240 - -
Lomi2g04417 274 Pfam NUDIX domain 109 232 IPR000086 -
Lomi2g04417 274 FunFam Nudix hydrolase 8 110 248 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04417 K26956 ADP-ribose/NAD+ diphosphatase [EC:3.6.1.13 3.6.1.22]
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Event-related genes

Select Gene_1 Gene_2 Event_name
324053 Lomi2g04417 Lomi1g00241
333424 Lomi1g00241 Lomi2g04417
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr13:9894628 Lomi2g04417 Lomi-Chr2:49438628 dispersed
Lomi Lomi-Chr14:8759652 Lomi2g04417 Lomi-Chr2:49438628 dispersed
Lomi Lomi-Chr1:2078804 Lomi2g04417 Lomi-Chr2:49438628 wgd