AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lomi2g04431 | ATGAATTCAACACTTCTCAAAACTCCATCTTTAATTCATTATCGTCATTTCCCATCTACAAAATTGTCTAAACAGTTTAAATTAGGTCCCTTGGTGTACAATCACAATAACAATTTTCACATTTCAAGAACCCTAAAGCTATTCAACACCAGAAGTTACCCAAAGAATTACATAAATATTGAAACCAAAGGTGCAGAATTGACCGACGATTCATCAAAAAAGGAGGATTTTGAGAAGTCTAAAGGATTAATTAGATGTGGGTTTGTAATGGGTATGTTGATTTTAGGGCTAATTAGATGTCAAAGAGTTGTAGCAATGGAAACTGGTAGTGATTTAGGGGTTTTTGCACAAAAGGGTTTGAGTTATATGAAGGGTTCTTGGAAGGGGCCTAGATTTTTACAGGTTCTCCAAGTTATCAGAGAACAAGGTTTGATTTTGGCTGCACTTTTGGGGTTATCTGCCTTTTTTTCTATGGCTGAGACATCAATTACTACATTGTCACCTTGGAAGGTTAGAGAGCTGGCGGAAAAAGAAGGAGAAAATGGTGTTTTCAAGCTGCTACGTACAGATATCACTCGTTTCCTCACCACCATCCTAATTGGCACAACCGTTGTCAACATTGGAGCTACTGCACTTTTCACAGAGGCTGCAACAACGGTTTTTGGCGAAGCTGGTGTTGGTGCAGCAACGGGTGTTATGACGGTGGTCGTTTTACTTCTAACTGAAATTACTCCCAAAAGTATAGCTGTTCACAATGCTACTGCGGTTGCTAGGGCTGTGGTCCGTCCAGTTGCATGGCTTTCTTTGGTTTTATATCCAGTTGGAAGAGTTGTAACATTCCTTTCTATGGGAATGCTAAAAATTCTTGGCTTGAAAGCGAAAAGTGAACCGTCTGTCACTGAAGATGAACTCAAGTTGATGTTGAGGGTAGCTGAGTTGAGTGGGGCCATTGAGGAGGAAGAACAGGATATGATCGAGAATGTGTTGGAGATAAAAGACACTCATGTGAAGGAGGTTATGACCCCTCTTGTAGATGTAGTTGCTGTTAATGCTGGTGCAACATTAGTTGATTTCCATCACTTGTGGGTGACTCATCAATATTCAAGGGTGCCAGTATTTGAGCAGCGAATTGATAACATCGTGGGTATAGCTTATGCAATGGATTTGTTGGATCTTGTTAAGAGGGGAGATATGCTAGATTCTGCAGTCGTGGGAGAGATTGCTCACAAGCCTGCATATTTTGTTCCTGATTCAATGCTAGTCTGGAATCTTCTGAGAGAATTCCGTATTAGAAAGGTCCACATGGCTGTTGTTCTCAATGAATATGGAGGAACTGTGGGAATTGTAACACTTGAAGATCTTGTTGAAGAAATTGTTGGTGAAATCTTCGATGAGAATGACTCAAAGGAGGAAATTGAAAGAAAAACTGGTAATATTGTAAAGCGAGCAGAGGGAGTGTTTGATGTTGATGCAAATACATCAATTTACCAACTTTCTGAAGATCTAGATATCATATTGCCAGAGGATCACCAATACGAGACGGTTTCAGGTTTCATTTGTGAAGCATTTGGATATATACCAAGAACAGGTGAAAGTATTTATGTAGTTCTAAAGAAAGCAAACAAAGAAGAAGATAACAATGATGATGACGAGCACAAACAAGAAACCAATGGTCAGGATCATAAAGAAACATCTCAAACATTTAAGCTCGGGATATTAGCAGGAAATTGTAGAAAAGTTAATACTGTAAGATTTGAAAGAATTAATAATCATTCAGCAAAAGAAATCAAAGAAGTTGCTCGTATCGTGCCCAGATTTTGGAAAACGAAATGGAAAAATGATGAAAGCTCAGGCAGTGGCGATGATGAACCCAAAACCACCTTCTCACATGACCATATTTTGTTAGAAGATAAACAATAA | 1920 | 38.85 | MNSTLLKTPSLIHYRHFPSTKLSKQFKLGPLVYNHNNNFHISRTLKLFNTRSYPKNYINIETKGAELTDDSSKKEDFEKSKGLIRCGFVMGMLILGLIRCQRVVAMETGSDLGVFAQKGLSYMKGSWKGPRFLQVLQVIREQGLILAALLGLSAFFSMAETSITTLSPWKVRELAEKEGENGVFKLLRTDITRFLTTILIGTTVVNIGATALFTEAATTVFGEAGVGAATGVMTVVVLLLTEITPKSIAVHNATAVARAVVRPVAWLSLVLYPVGRVVTFLSMGMLKILGLKAKSEPSVTEDELKLMLRVAELSGAIEEEEQDMIENVLEIKDTHVKEVMTPLVDVVAVNAGATLVDFHHLWVTHQYSRVPVFEQRIDNIVGIAYAMDLLDLVKRGDMLDSAVVGEIAHKPAYFVPDSMLVWNLLREFRIRKVHMAVVLNEYGGTVGIVTLEDLVEEIVGEIFDENDSKEEIERKTGNIVKRAEGVFDVDANTSIYQLSEDLDIILPEDHQYETVSGFICEAFGYIPRTGESIYVVLKKANKEEDNNDDDEHKQETNGQDHKETSQTFKLGILAGNCRKVNTVRFERINNHSAKEIKEVARIVPRFWKTKWKNDESSGSGDDEPKTTFSHDHILLEDKQ | 639 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lomi2g04431 | 639 | SUPERFAMILY | CBS-domain pair | 323 | 462 | IPR046342 | - | |
| Lomi2g04431 | 639 | ProSiteProfiles | CBS domain profile. | 408 | 465 | IPR000644 | - | |
| Lomi2g04431 | 639 | Gene3D | - | 315 | 470 | IPR046342 | - | |
| Lomi2g04431 | 639 | PANTHER | HEMOLYSIN-RELATED | 117 | 612 | - | - | |
| Lomi2g04431 | 639 | SMART | cbs-1 | 345 | 394 | IPR000644 | - | |
| Lomi2g04431 | 639 | SMART | cbs-1 | 411 | 459 | IPR000644 | - | |
| Lomi2g04431 | 639 | CDD | CBS-pair-CorC-HlyC-assoc | 335 | 456 | IPR044751 | - | |
| Lomi2g04431 | 639 | Gene3D | - | 475 | 569 | IPR016169 | - | |
| Lomi2g04431 | 639 | MobiDBLite | consensus disorder prediction | 612 | 639 | - | - | |
| Lomi2g04431 | 639 | SUPERFAMILY | FAD-binding-transporter-associated domain-like | 478 | 541 | IPR036318 | GO:0050660(InterPro) | |
| Lomi2g04431 | 639 | MobiDBLite | consensus disorder prediction | 542 | 565 | - | - | |
| Lomi2g04431 | 639 | MobiDBLite | consensus disorder prediction | 542 | 562 | - | - | |
| Lomi2g04431 | 639 | Pfam | CBS domain | 404 | 459 | IPR000644 | - | |
| Lomi2g04431 | 639 | Pfam | CBS domain | 336 | 393 | IPR000644 | - | |
| Lomi2g04431 | 639 | ProSiteProfiles | CBS domain profile. | 340 | 401 | IPR000644 | - | |
| Lomi2g04431 | 639 | Pfam | Cyclin M transmembrane N-terminal domain | 144 | 321 | IPR002550 | - | |
| Lomi2g04431 | 639 | ProSiteProfiles | CNNM transmembrane domain profile. | 135 | 321 | IPR002550 | - | |
| Lomi2g04431 | 639 | FunFam | Magnesium-cobalt efflux protein CorC | 317 | 467 | - | - | |
| Lomi2g04431 | 639 | SMART | CorC-HlyC-2 | 480 | 589 | IPR005170 | - | |
| Lomi2g04431 | 639 | Pfam | Transporter associated domain | 481 | 538 | IPR005170 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lomi2g04431 | K03699 | magnesium and cobalt exporter, CNNM family |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 324043 | Lomi2g04431 | Lomi1g00228 | |
| 333434 | Lomi1g00228 | Lomi2g04431 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lomi | Lomi-Chr1:5074131 | Lomi2g04431 | Lomi-Chr2:49532213 | dispersed | |
| Lomi | Lomi-Chr2:46588917 | Lomi2g04431 | Lomi-Chr2:49532213 | dispersed | |
| Lomi | Lomi-Chr1:1968642 | Lomi2g04431 | Lomi-Chr2:49532213 | wgd |