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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04442 ATGGACAACAACGTATCTAAAGGAAGTGTTTTTGTGACTGTTGGCACAACATCATTCGATTCTCTTGTTAAAACTGTTGACACTGACCATGTTAAAAAAGGCTTGTTAGAAAAAGGTTACACTCACCTTGTCATTCAAATGGGCCGTGGATCCTACGTCCCTAAAAAGTCTAGTGGCGAAGATGGATCACTGGTTGTCGATTACTTTACTTTTAGTTCTAGCATTGCAGACTATTTGAAATCAGCATCTCTTGTTATAAGTCATGCAGGTTCAGGGAGTATATTTGAGACACTAAAGCTAGCCAAACCTTTAATAGTGGTAGTGAATGAGGACCTGATGGACAACCATCAAAGTGAGCTTGCTGAAGAGCTAGCAGAAAGGAAGCATTTATTTTGTGCTAACCCTCAAATGCTCTACCAGATCATTGAATCATTACATTTGGATTCAATTGTTCCATACGAGTCAGGTGATGCTACTCCCGTTGCTAAACTAATCAATAGGCATCTTGGTTTTCCTGCTGATTGA 525 39.62 MDNNVSKGSVFVTVGTTSFDSLVKTVDTDHVKKGLLEKGYTHLVIQMGRGSYVPKKSSGEDGSLVVDYFTFSSSIADYLKSASLVISHAGSGSIFETLKLAKPLIVVVNEDLMDNHQSELAEELAERKHLFCANPQMLYQIIESLHLDSIVPYESGDATPVAKLINRHLGFPAD 174
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04442 174 Gene3D Glycogen Phosphorylase B; 4 169 - -
Lomi2g04442 174 FunFam UDP-N-acetylglucosamine transferase subunit alg13 4 169 - -
Lomi2g04442 174 Pfam Glycosyltransferase family 28 C-terminal domain 10 158 IPR007235 GO:0016758(InterPro)
Lomi2g04442 174 PANTHER UDP-N-ACETYLGLUCOSAMINE TRANSFERASE SUBUNIT ALG13 6 173 IPR052474 GO:0006488(PANTHER)|GO:0043541(PANTHER)
Lomi2g04442 174 SUPERFAMILY UDP-Glycosyltransferase-glycogen phosphorylase 41 145 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04442 K07432 beta-1,4-N-acetylglucosaminyltransferase [EC:2.4.1.141]
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Event-related genes

Select Gene_1 Gene_2 Event_name
324039 Lomi2g04442 Lomi1g00223
333438 Lomi1g00223 Lomi2g04442
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:1913570 Lomi2g04442 Lomi-Chr2:49599023 wgd