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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04443 ATGGCTATAACTATCAGCTCTACCCTCATCCTACTGTTTTTGTTTCTTGCATCTTTAGACATATCATACGCTGGAATGTGCACAGACCACAAATTTACATCTAAAAGAGTATACAGTTCTTGTAAAGATCTTCCACATTTAACTGCTCATCTCCACTGGACCTACAATGCATCCATGGGCATAGCGCAGATCGCATACCGAGCCAGACAAGGTTCCCGTGGTTGGGTGGCTTGGGCAATCAACCCGAACCAAATAGGTATGGTTGGGTCAGAAGCACTGGTGGCTTTCCACAACAGTAATGGAAGTATAACAGTATACCCAACGATGATAACAAGTTATAGCCCATCAATGTTGCCTGAAGATCTTAGCTTCCGGGTTTCAGGCCTTTCAGCTGAGTTCTTAAACAACGAGATTACCATTTACGCGACTGTGGGCCCGTTTTCAGGTGGGTCGCTTGTTAACCAAGTATGGCAAGCTGGGAGTTTGGTTTTGGATGATGTCCCTCAGATGCACGAGGTTTCACAGCAGAATCTTGAATCAACAGGAGAACTTGATTTCTTGTCTGAATAG 570 44.56 MAITISSTLILLFLFLASLDISYAGMCTDHKFTSKRVYSSCKDLPHLTAHLHWTYNASMGIAQIAYRARQGSRGWVAWAINPNQIGMVGSEALVAFHNSNGSITVYPTMITSYSPSMLPEDLSFRVSGLSAEFLNNEITIYATVGPFSGGSLVNQVWQAGSLVLDDVPQMHEVSQQNLESTGELDFLSE 189
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04443 189 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 8 188 - -
Lomi2g04443 189 CDD DOMON-CIL1-like 38 188 IPR045265 -
Lomi2g04443 189 ProSiteProfiles DOMON domain profile. 47 160 IPR005018 -
Lomi2g04443 189 Pfam Protein of unknown function (DUF568) 87 186 IPR045265 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04443 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
122958 Lomi2g04443 Lomi5g02169
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr2:49600233 Lomi8g02176 Lomi-Chr8:29751799 dispersed
Lomi Lomi-Chr2:49600233 Lomi2g04444 Lomi-Chr2:49601531 tandem
Lomi Lomi-Chr1:1911477 Lomi2g04443 Lomi-Chr2:49600233 wgd
Lomi Lomi-Chr11:28267635 Lomi2g04443 Lomi-Chr2:49600233 wgd
Lomi Lomi-Chr2:49600233 Lomi5g02169 Lomi-Chr5:32224190 wgd