Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lomi2g04469 | ATGGACGTACTGTTCAATTCAATCGACGTTCGTGATTTACTATCATCACACGATCTCGACGACTCATCACCGCTCTCCGCCCCAGATCTTCGTCTTCTAATCGACCGTCTTCAAATTCGTTCACTCGACATTAAGTCCAAAGTCCAAAACTACATTCACTCTCACAACCACGACTTCCATGCCCTATTTTCTCACTGTTCCGATGCCGTCGTTAACTCCGAACAGATTTCCGATCAAGTATCTGACCTTATCAATCTCTTATCATCAGATCGGAAACCGATTGATGTCGAGATCAAGGAAACGGTTAATGAAATTAGGTCAAGACGTGTTGAATCGAAAGAGAAGAAAGATACGTTAGGATTAGTTAATGTAGTGTTGAAATTGAGTGAGATGTTGAGTGTTGCGGAGAGTGATTTGATCGCCGGAAATGTTGTTGAAGCTGCGGTGGCGGTTACGGAGTTGAAAATGGCATTGCGTGTGGACGATTGTAACGATGATCGTGAGCCAATTGTGTTTGGCTTGTTACGGAAGAAATGGAGAGATTGCTTTGAACAGATACAAGAAGTGTTAGTTAAGTTTATTGAGAATGCAGTGAGATTCGATCAGGAGTCCAATGCCGTTTATGTAAAGAATGCGGTGGCTATGAATGATATGCAAGGTGTTGAGCTGTGTACTGTGTTGAAAGCTATGGATGTGGTTGGTATTCTAGATTATGGACTTGCTAAAGTAGCAGACTTGATGACTAGAAATGTGATAGCTCCTGCAGTGAGATCTGGTTCTCATAGTTTTTCTGTAGAAGAACAAAAGCTAGATTCAGGAGATATAGCTGATGTAATATTGAGGATAACTTCACCATCAGATCCTCAGATTGAGAGCAGGGATGCTGAGACTATTTATTCCGGAATTAGTGTTGTCATACAATTTATTTTCAATTATATTTGCTTTCAAAATCCTTCCTGGATGCAATTATTTGGAAGATTGACATGGCCCCAGATGTCTGAATTGATTATTGCTAACTTCCTTTCCAAGATTGTTCCTAACGATGCTTCCAAACTTGCTGACTTTCAAACAACTAGACAACTTACGTCTGAGTTTGAGACATCACTTAAAGAAATTATGTTCATCTCATCTGGCAAAGATGAAAGGTTGAGCAATTTTGCAGACAATGTTGAAGTTCACTTTGCAACGAGGAAGAAAGTTGAAATACTTGCAACAGCCAGGGATCTTCTTCTGCATTCAGATTTTAAACTTCCCAAGGACTATTCAAGGAAAAGTGCAGAATATAATAATGGTGGGAATGTAGACTTGCTTTTCTCATCTGAGAGGTGTGTCATATCCGAAGCAGCTTCTCAGCTAATGGAAGTTGTGCATCAAACACTCAAGGATGTTTGCTTGTCATCTGCAACAGTGGCATTAGAGTTCTACCATGCTGCTAGGGATGCGTTACTTCTGTATGAAGCTGTTATTCCTGTCAAGCTAGAAAGACAGCTGGATGGTATCAACCAGGTTGCTGTTCTAATTCATAATGATTGTCTATTCCTATCACAGGAGATTCTTGGCCTTGCATTTGAGTATCAGTCAGACTTTCCAACTTCCATGAAGGGAGCGGTTTTTGTTGATTTGGGTATAAGATACAAGTTGATGGCAGAAGAGATACTACAAAGACAAATACAGCTTGTCAAGCATAATTTGATGGAGGCCATCGATGGTGCAGATGGATTTCAGAATACCCATCAACTAAAGCGAAATGAATCTGCAAAATTCAGTATTGATCAGGTAGCTTTTATCCTTGAGAAAGTGCACATAATATGGGAGCCATTGTTGCTACCCTTGACATACAAGGGAAGTATGTGCACAGTCTTGGAGGCTGTATGTTCTAGAATGACCAAAGACATACTCCAGTTAGATGACATTGCAGCAGAAGAAACATTACAGATTCAAAGGTTAATTCATATGCTGCTGGAAAACCTTTCATCTTTATTGGAGTCTTTGGTTGCTATCAGTCAAACAACAAAACCACAAGAGGCATCATCACACTCTATCGATGATCTCATACCATCACTCCCTCGACTACGGATATTGGCAGATATGCTGGACATGCCTCTGAAGTCGATTACTGCATCTTGGGAAAGTGGAGAGTTGGCCAACTGTGGTTATACTTCATCTGAGTTGAAGGACTTTATCAGAGCAATATTTACAGATTCACCCCTGCGGAAAGAATGCTTGTGGAGAATTGAAAATATTAGATTTTAG | 2253 | 40.35 | MDVLFNSIDVRDLLSSHDLDDSSPLSAPDLRLLIDRLQIRSLDIKSKVQNYIHSHNHDFHALFSHCSDAVVNSEQISDQVSDLINLLSSDRKPIDVEIKETVNEIRSRRVESKEKKDTLGLVNVVLKLSEMLSVAESDLIAGNVVEAAVAVTELKMALRVDDCNDDREPIVFGLLRKKWRDCFEQIQEVLVKFIENAVRFDQESNAVYVKNAVAMNDMQGVELCTVLKAMDVVGILDYGLAKVADLMTRNVIAPAVRSGSHSFSVEEQKLDSGDIADVILRITSPSDPQIESRDAETIYSGISVVIQFIFNYICFQNPSWMQLFGRLTWPQMSELIIANFLSKIVPNDASKLADFQTTRQLTSEFETSLKEIMFISSGKDERLSNFADNVEVHFATRKKVEILATARDLLLHSDFKLPKDYSRKSAEYNNGGNVDLLFSSERCVISEAASQLMEVVHQTLKDVCLSSATVALEFYHAARDALLLYEAVIPVKLERQLDGINQVAVLIHNDCLFLSQEILGLAFEYQSDFPTSMKGAVFVDLGIRYKLMAEEILQRQIQLVKHNLMEAIDGADGFQNTHQLKRNESAKFSIDQVAFILEKVHIIWEPLLLPLTYKGSMCTVLEAVCSRMTKDILQLDDIAAEETLQIQRLIHMLLENLSSLLESLVAISQTTKPQEASSHSIDDLIPSLPRLRILADMLDMPLKSITASWESGELANCGYTSSELKDFIRAIFTDSPLRKECLWRIENIRF | 750 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lomi2g04469 | 750 | Pfam | Centromere-kinetochore protein zw10, C-terminal | 438 | 566 | IPR048343 | - | |
| Lomi2g04469 | 750 | Pfam | Centromere-kinetochore Zw10 N-terminal | 37 | 132 | IPR009361 | GO:0000278(InterPro)|GO:0000775(InterPro)|GO:0005634(InterPro) | |
| Lomi2g04469 | 750 | PANTHER | CENTROMERE-KINETOCHORE PROTEIN ZW10 | 4 | 747 | - | GO:0006888(PANTHER)|GO:0007094(PANTHER)|GO:1990423(PANTHER) | |
| Lomi2g04469 | 750 | Gene3D | - | 543 | 750 | IPR046362 | - | |
| Lomi2g04469 | 750 | Pfam | ZW10 C-terminal helical domain | 589 | 745 | - | - | |
| Lomi2g04469 | 750 | Pfam | Centromere-kinetochore protein zw10, middle domain | 175 | 410 | IPR048344 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lomi2g04469 | K11578 | protein transport protein DSL1/ZW10 |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 324026 | Lomi2g04469 | Lomi1g00201 | |
| 333451 | Lomi1g00201 | Lomi2g04469 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lomi | Lomi-Chr1:1783919 | Lomi2g04469 | Lomi-Chr2:49776737 | wgd |