AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04469 ATGGACGTACTGTTCAATTCAATCGACGTTCGTGATTTACTATCATCACACGATCTCGACGACTCATCACCGCTCTCCGCCCCAGATCTTCGTCTTCTAATCGACCGTCTTCAAATTCGTTCACTCGACATTAAGTCCAAAGTCCAAAACTACATTCACTCTCACAACCACGACTTCCATGCCCTATTTTCTCACTGTTCCGATGCCGTCGTTAACTCCGAACAGATTTCCGATCAAGTATCTGACCTTATCAATCTCTTATCATCAGATCGGAAACCGATTGATGTCGAGATCAAGGAAACGGTTAATGAAATTAGGTCAAGACGTGTTGAATCGAAAGAGAAGAAAGATACGTTAGGATTAGTTAATGTAGTGTTGAAATTGAGTGAGATGTTGAGTGTTGCGGAGAGTGATTTGATCGCCGGAAATGTTGTTGAAGCTGCGGTGGCGGTTACGGAGTTGAAAATGGCATTGCGTGTGGACGATTGTAACGATGATCGTGAGCCAATTGTGTTTGGCTTGTTACGGAAGAAATGGAGAGATTGCTTTGAACAGATACAAGAAGTGTTAGTTAAGTTTATTGAGAATGCAGTGAGATTCGATCAGGAGTCCAATGCCGTTTATGTAAAGAATGCGGTGGCTATGAATGATATGCAAGGTGTTGAGCTGTGTACTGTGTTGAAAGCTATGGATGTGGTTGGTATTCTAGATTATGGACTTGCTAAAGTAGCAGACTTGATGACTAGAAATGTGATAGCTCCTGCAGTGAGATCTGGTTCTCATAGTTTTTCTGTAGAAGAACAAAAGCTAGATTCAGGAGATATAGCTGATGTAATATTGAGGATAACTTCACCATCAGATCCTCAGATTGAGAGCAGGGATGCTGAGACTATTTATTCCGGAATTAGTGTTGTCATACAATTTATTTTCAATTATATTTGCTTTCAAAATCCTTCCTGGATGCAATTATTTGGAAGATTGACATGGCCCCAGATGTCTGAATTGATTATTGCTAACTTCCTTTCCAAGATTGTTCCTAACGATGCTTCCAAACTTGCTGACTTTCAAACAACTAGACAACTTACGTCTGAGTTTGAGACATCACTTAAAGAAATTATGTTCATCTCATCTGGCAAAGATGAAAGGTTGAGCAATTTTGCAGACAATGTTGAAGTTCACTTTGCAACGAGGAAGAAAGTTGAAATACTTGCAACAGCCAGGGATCTTCTTCTGCATTCAGATTTTAAACTTCCCAAGGACTATTCAAGGAAAAGTGCAGAATATAATAATGGTGGGAATGTAGACTTGCTTTTCTCATCTGAGAGGTGTGTCATATCCGAAGCAGCTTCTCAGCTAATGGAAGTTGTGCATCAAACACTCAAGGATGTTTGCTTGTCATCTGCAACAGTGGCATTAGAGTTCTACCATGCTGCTAGGGATGCGTTACTTCTGTATGAAGCTGTTATTCCTGTCAAGCTAGAAAGACAGCTGGATGGTATCAACCAGGTTGCTGTTCTAATTCATAATGATTGTCTATTCCTATCACAGGAGATTCTTGGCCTTGCATTTGAGTATCAGTCAGACTTTCCAACTTCCATGAAGGGAGCGGTTTTTGTTGATTTGGGTATAAGATACAAGTTGATGGCAGAAGAGATACTACAAAGACAAATACAGCTTGTCAAGCATAATTTGATGGAGGCCATCGATGGTGCAGATGGATTTCAGAATACCCATCAACTAAAGCGAAATGAATCTGCAAAATTCAGTATTGATCAGGTAGCTTTTATCCTTGAGAAAGTGCACATAATATGGGAGCCATTGTTGCTACCCTTGACATACAAGGGAAGTATGTGCACAGTCTTGGAGGCTGTATGTTCTAGAATGACCAAAGACATACTCCAGTTAGATGACATTGCAGCAGAAGAAACATTACAGATTCAAAGGTTAATTCATATGCTGCTGGAAAACCTTTCATCTTTATTGGAGTCTTTGGTTGCTATCAGTCAAACAACAAAACCACAAGAGGCATCATCACACTCTATCGATGATCTCATACCATCACTCCCTCGACTACGGATATTGGCAGATATGCTGGACATGCCTCTGAAGTCGATTACTGCATCTTGGGAAAGTGGAGAGTTGGCCAACTGTGGTTATACTTCATCTGAGTTGAAGGACTTTATCAGAGCAATATTTACAGATTCACCCCTGCGGAAAGAATGCTTGTGGAGAATTGAAAATATTAGATTTTAG 2253 40.35 MDVLFNSIDVRDLLSSHDLDDSSPLSAPDLRLLIDRLQIRSLDIKSKVQNYIHSHNHDFHALFSHCSDAVVNSEQISDQVSDLINLLSSDRKPIDVEIKETVNEIRSRRVESKEKKDTLGLVNVVLKLSEMLSVAESDLIAGNVVEAAVAVTELKMALRVDDCNDDREPIVFGLLRKKWRDCFEQIQEVLVKFIENAVRFDQESNAVYVKNAVAMNDMQGVELCTVLKAMDVVGILDYGLAKVADLMTRNVIAPAVRSGSHSFSVEEQKLDSGDIADVILRITSPSDPQIESRDAETIYSGISVVIQFIFNYICFQNPSWMQLFGRLTWPQMSELIIANFLSKIVPNDASKLADFQTTRQLTSEFETSLKEIMFISSGKDERLSNFADNVEVHFATRKKVEILATARDLLLHSDFKLPKDYSRKSAEYNNGGNVDLLFSSERCVISEAASQLMEVVHQTLKDVCLSSATVALEFYHAARDALLLYEAVIPVKLERQLDGINQVAVLIHNDCLFLSQEILGLAFEYQSDFPTSMKGAVFVDLGIRYKLMAEEILQRQIQLVKHNLMEAIDGADGFQNTHQLKRNESAKFSIDQVAFILEKVHIIWEPLLLPLTYKGSMCTVLEAVCSRMTKDILQLDDIAAEETLQIQRLIHMLLENLSSLLESLVAISQTTKPQEASSHSIDDLIPSLPRLRILADMLDMPLKSITASWESGELANCGYTSSELKDFIRAIFTDSPLRKECLWRIENIRF 750
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04469 750 Pfam Centromere-kinetochore protein zw10, C-terminal 438 566 IPR048343 -
Lomi2g04469 750 Pfam Centromere-kinetochore Zw10 N-terminal 37 132 IPR009361 GO:0000278(InterPro)|GO:0000775(InterPro)|GO:0005634(InterPro)
Lomi2g04469 750 PANTHER CENTROMERE-KINETOCHORE PROTEIN ZW10 4 747 - GO:0006888(PANTHER)|GO:0007094(PANTHER)|GO:1990423(PANTHER)
Lomi2g04469 750 Gene3D - 543 750 IPR046362 -
Lomi2g04469 750 Pfam ZW10 C-terminal helical domain 589 745 - -
Lomi2g04469 750 Pfam Centromere-kinetochore protein zw10, middle domain 175 410 IPR048344 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04469 K11578 protein transport protein DSL1/ZW10
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
324026 Lomi2g04469 Lomi1g00201
333451 Lomi1g00201 Lomi2g04469
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:1783919 Lomi2g04469 Lomi-Chr2:49776737 wgd