Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lomi2g04481	ATGATTAAGCAAATACTAAATAAGCTTCCAAAGAAATCATCTTCAAAATCTTCACATAATGATGAAGGGAAGAATGAAATAGATTCTGCCGATGCTAAGAAATCAGGTCCTGTTGATGCGACCCAAGTGTTGGAAGTATTTAATCATGATTCTTTTGATGCATTACCTAGTTTTCGAGCCGTATCGAATTCAGAAAAACACAATTTATTCATCAAGAAGTTAAATATGTGTTGTGTAGTGTTTGATTTTAACGATTCATCTAAGCATGCAAAAGAAAAGGATGAAAAGAAACAAACTTTGCTCGAGCTAGTTGATTATGTTTCTTCGGTCTCCTCAAAATTTAACGAGGTTACAATACAGGAAATCACGAAAATGGTTGCTGCTAATTTGTTTCGTTGTTTACCTAATTTGAATAACGAAAACAAGGTCTTAGATTTGTATGATCAAGAAGATGATGAATATAGTACGGATCCATCGTGGCCGCATTTGCAAGTCGTTTATGAGTTCCTTCTTAGGTTTGTGGCTTCACCAGAAACAGATGCAAAGCTTGCGAAAAGATATATGGATCATTCTTTCGTGTTGAAGCTGCTTGATCTTTTTGATTCTGAGGATCAAAGAGAACGGGAGTATTTGAAAACAATCATGCACCGGATTTATGGAAAGTTCATGGTGCATCGGCCGTTTATCAGGAAAGCGATAAACAATATCTTTTATCTTTTCATATTTGAAACGGGCAAGCATAATGGGATTTCTGAATTGCTCGAGCTTTTGGGTAGTATAATTAATGGGTTTGCTTTGCCATTGAAGGAAGAACATAAGGCTTTCCTTGCCCATGTTTTGATCCCACTTCACAAGCCTAGAAGTTTGTCGATTTATCAGCAGCAGTTATCGTATTGTGTTGGTCAGTTTATTGAAAAAGACTCTAAGTTGGCTGAGATGGTGATTCGGGGGTTACTGAAGTATTGGCCTGTAACTAATAGTTCAAAAGAGGTTATGTATCTTAGTGAATTGGAGGAAATTCTTGAAGCTACAAAGGCTGCCGAATTCGAAAAATGTATGGTCCCTTTGTTTCGACAGATTGGTCAATGTCTCAATAGTTCGCATTTTCAGGTAGCAGAACGTGCGTTGTTCCTGTGGAATAATGAGCATATAAGGAATCTGATCAATCAAAACCGCAAGGTGATTCTTCCCATTATATTCGCCTTCTTGGAGAAAAACACGCAAAGTCATTGGAACCAAGCCGTTCAAAGCCTAACCATAAATGTCAGAAAAATCTTCTCAGAAGCTGATCAATTACTATTCCAAGAATGCCTTGTCAAGTACCGAGAATATGAAACAAGTGAAAAGCAAAGACTCGCAAATCGACAGTCAACATGGAACCGTTTGGATGCAATTGCAGCCACCCAAAACGAGACTAATTTAGTCATCTCGAGGCTGTCTTCTTCTGTCACTATCACCACTGCTGCCACCGCCACTGTGAACTAA	1485	38.18	MIKQILNKLPKKSSSKSSHNDEGKNEIDSADAKKSGPVDATQVLEVFNHDSFDALPSFRAVSNSEKHNLFIKKLNMCCVVFDFNDSSKHAKEKDEKKQTLLELVDYVSSVSSKFNEVTIQEITKMVAANLFRCLPNLNNENKVLDLYDQEDDEYSTDPSWPHLQVVYEFLLRFVASPETDAKLAKRYMDHSFVLKLLDLFDSEDQREREYLKTIMHRIYGKFMVHRPFIRKAINNIFYLFIFETGKHNGISELLELLGSIINGFALPLKEEHKAFLAHVLIPLHKPRSLSIYQQQLSYCVGQFIEKDSKLAEMVIRGLLKYWPVTNSSKEVMYLSELEEILEATKAAEFEKCMVPLFRQIGQCLNSSHFQVAERALFLWNNEHIRNLINQNRKVILPIIFAFLEKNTQSHWNQAVQSLTINVRKIFSEADQLLFQECLVKYREYETSEKQRLANRQSTWNRLDAIAATQNETNLVISRLSSSVTITTAATATVN	494

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lomi2g04481	494	SUPERFAMILY	ARM repeat	67	449	IPR016024	-
	Lomi2g04481	494	MobiDBLite	consensus disorder prediction	1	36	-	-
	Lomi2g04481	494	FunFam	Serine-threonine protein phosphatase 2A regulatory subunit	62	465	-	-
	Lomi2g04481	494	Gene3D	-	63	464	IPR011989	-
	Lomi2g04481	494	PANTHER	SERINE-THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B	1	470	IPR002554	GO:0000159(InterPro)\|GO:0007165(InterPro)\|GO:0019888(InterPro)
	Lomi2g04481	494	PIRSF	PP2A-B56	3	493	IPR002554	GO:0000159(InterPro)\|GO:0007165(InterPro)\|GO:0019888(InterPro)
	Lomi2g04481	494	MobiDBLite	consensus disorder prediction	14	33	-	-
	Lomi2g04481	494	Pfam	Protein phosphatase 2A regulatory B subunit (B56 family)	55	466	IPR002554	GO:0000159(InterPro)\|GO:0007165(InterPro)\|GO:0019888(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lomi2g04481	K11584	serine/threonine-protein phosphatase 2A regulatory subunit B'

Event-related genes

Select	Gene_1	Gene_2	Event_name
	118768	Lomi11g01994	Lomi2g04481
	122969	Lomi2g04481	Lomi5g02194
	324016	Lomi2g04481	Lomi1g00188
	333461	Lomi1g00188	Lomi2g04481

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Lomi	Lomi-Chr2:49885142	Lomi4g01770	Lomi-Chr4:25665027	dispersed
	Lomi	Lomi-Chr1:1674091	Lomi2g04481	Lomi-Chr2:49885142	wgd
	Lomi	Lomi-Chr11:28443644	Lomi2g04481	Lomi-Chr2:49885142	wgd
	Lomi	Lomi-Chr2:49885142	Lomi5g02194	Lomi-Chr5:32423560	wgd