AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lomi2g04482 | ATGTCTTGTTCATCTTCATCTTCATGGTGGCAATCCCTCTTCTCTCCGGCCAAAAATTCATTCACCGCTCACTGCTTCAAACGCCTCCATGAATACGCCATTAAGGTCAAAGTTAAGGTGATGAGATCATCATCACAGGAGACAAAAGCATTAGCAAGTCTTAAGGAGATGGAGAAGATTATAGGGTATAAGTTCAAGAAAAAGATTCTGTTGCAACAAGCTTTTACACATCCAAGTTATCAGGGAGCTGAATCCTATGAAAGACTTGAGTATGTTGGTGATTCTATACTCAATTTTCTGATTAGTAAACAGCAATTCTATATGTACCCGAATCTCCCACCAGGGTCATTGACTGCTCTCCGAGCTGCAAATGTTGACACTGAGAAGCTAGCACGTGTAGCGGTTAAATATAACTTTTATAAATACCTGCGACATGAAAATCCGATGCTTTGTAAGCAGATTCGAGTATTTATGAGTGCTCTTGAAAAATATCCTTTTCATTCATATGGATTAATTGATGCTCCAAAGACTTTAGCTGATATTGTTGAATCCACAATAGGGGCCATCTATGTTGACAGCAACTCTTCAATTGATACGACATGGGAGGTGGCTAAGATTCTACTGGAGCCCATGATCACTCCTGAAATGCTGCAACACAATCCAGTAAGGAAGCTCAATGAACTCTGCCACAAGAAGAAATTAAAGATACGATTTAGAGATAAATGGTCAAAAAAGGGGGTATACGAAGTGTTTGTCGATAATCAACTGATAGGAAGTGGTGAATACAAAGCTAAAAAAGAAATCGCACTAAACAGAGCAGCTGAGGATGCATGTAACAACATTTTGAACAACGTAAATGCTATAAGCAATGTAGCTAAAACTCAAGAATAG | 891 | 38.83 | MSCSSSSSWWQSLFSPAKNSFTAHCFKRLHEYAIKVKVKVMRSSSQETKALASLKEMEKIIGYKFKKKILLQQAFTHPSYQGAESYERLEYVGDSILNFLISKQQFYMYPNLPPGSLTALRAANVDTEKLARVAVKYNFYKYLRHENPMLCKQIRVFMSALEKYPFHSYGLIDAPKTLADIVESTIGAIYVDSNSSIDTTWEVAKILLEPMITPEMLQHNPVRKLNELCHKKKLKIRFRDKWSKKGVYEVFVDNQLIGSGEYKAKKEIALNRAAEDACNNILNNVNAISNVAKTQE | 296 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lomi2g04482 | 296 | Gene3D | Ribonuclease III domain | 41 | 215 | IPR036389 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Lomi2g04482 | 296 | SUPERFAMILY | RNase III domain-like | 53 | 214 | IPR036389 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Lomi2g04482 | 296 | SMART | riboneu5 | 69 | 217 | IPR000999 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Lomi2g04482 | 296 | Pfam | Ribonuclease III domain | 87 | 193 | IPR000999 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Lomi2g04482 | 296 | Pfam | Double-stranded RNA binding motif | 221 | 280 | IPR014720 | - | |
| Lomi2g04482 | 296 | PANTHER | DICER-RELATED | 36 | 283 | - | GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER) | |
| Lomi2g04482 | 296 | CDD | RIBOc | 70 | 217 | IPR000999 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Lomi2g04482 | 296 | FunFam | Endoribonuclease dicer-like 1 | 48 | 215 | - | - | |
| Lomi2g04482 | 296 | ProSitePatterns | Ribonuclease III family signature. | 87 | 95 | IPR000999 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Lomi2g04482 | 296 | Gene3D | - | 216 | 284 | - | - | |
| Lomi2g04482 | 296 | SUPERFAMILY | dsRNA-binding domain-like | 176 | 281 | - | - | |
| Lomi2g04482 | 296 | ProSiteProfiles | Ribonuclease III family domain profile. | 54 | 194 | IPR000999 | GO:0004525(InterPro)|GO:0006396(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lomi2g04482 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 122970 | Lomi2g04482 | Lomi4g02610 | |
| 324015 | Lomi2g04482 | Lomi1g00187 | |
| 333462 | Lomi1g00187 | Lomi2g04482 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lomi | Lomi-Chr13:29470491 | Lomi2g04482 | Lomi-Chr2:49901511 | dispersed | |
| Lomi | Lomi-Chr2:46735595 | Lomi2g04482 | Lomi-Chr2:49901511 | dispersed | |
| Lomi | Lomi-Chr2:49901511 | Lomi4g02995 | Lomi-Chr4:37118704 | dispersed | |
| Lomi | Lomi-Chr1:1665291 | Lomi2g04482 | Lomi-Chr2:49901511 | wgd | |
| Lomi | Lomi-Chr2:49901511 | Lomi3g00754 | Lomi-Chr3:6152221 | wgd | |
| Lomi | Lomi-Chr2:49901511 | Lomi4g02610 | Lomi-Chr4:33602815 | wgd |