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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04484 ATGGACGAGGTGATCACCATCGCCGATGCGGCGTACCGCGCTAGCAAGTCGGCGGCGGTAACGCCAACGTCTTCAGTTCCGATTCCATCGTACAGTGTTCCACTGATAACAGCATTCCTTGCTTTTGCTATTGCTCAATTCCTCAAAGTCATCACCACCTGGTATAAGGAAAAGAAATGGGATCCTAAGAAGATTGTTGGCTCAGGTGGAATGCCATCATCTCATTCTTCAACTGTTGTGGCACTTGCAGTATCTATAGGTCTACATGAAGGAGTTGGATCATCAACATTTGCAATTGCTGTTGTCTTAGCTTTTATTGTTATGTACGATGCATCTGGAGTCAGACTCCATGCTGGTCGCCAAGCTGAATTATTGAACCAGATTGTATGTGAATTTCCACCTGAGCACCCTTTATCCACATCCATACCTCTACGTGATTCTCTTGGGCATACTCCGTTCCAGGTGGTTGCAGGGGCCGTGTTAGGCTTCATAGTGGCACTCGTGATGAAAGCATCTAACTGA 522 46.74 MDEVITIADAAYRASKSAAVTPTSSVPIPSYSVPLITAFLAFAIAQFLKVITTWYKEKKWDPKKIVGSGGMPSSHSSTVVALAVSIGLHEGVGSSTFAIAVVLAFIVMYDASGVRLHAGRQAELLNQIVCEFPPEHPLSTSIPLRDSLGHTPFQVVAGAVLGFIVALVMKASN 173
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04484 173 CDD PAP2-like 35 168 - -
Lomi2g04484 173 PANTHER ACID PHOSPHATASE-VANADIUM-DEPENDENT HALOPEROXIDASE-RELATED PROTEIN 14 171 IPR003832 -
Lomi2g04484 173 Pfam Divergent PAP2 family 34 165 IPR003832 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04484 K09775 uncharacterized protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
324013 Lomi2g04484 Lomi1g00184
333464 Lomi1g00184 Lomi2g04484
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr2:49923689 Lomi7g00244 Lomi-Chr7:2411511 dispersed
Lomi Lomi-Chr1:1649128 Lomi2g04484 Lomi-Chr2:49923689 wgd