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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04487 ATGGCATTAAACAGGGCTGGATCATGTAATCCGGCCGTTGTAAAGATCGGAATTACATTTTTAGGGTTGTGTTTGGTGGGTTATTTATTAGGTCCGCCGTTATATTGGCACGTCCTTGAAGGATTAGCCGCCGTCCGCCGCTCATCCTCCGCCGTATCTTGCCCTACTTGCAACTGTGACTGTGATTCTCAACCACTTCTTACAATTCCTCAAGGGCTTAGCAATGGTTCCTTCACAGATTGTGCAAAGCATGATCCTGAAGTAAGTGGAGACACAGAAAAGAATTTTGCAGAGCTTCTATCCGAGGAATTGAAGCTACGAGAAGCTGAAGCTTTAGAAAGTCAACAACGTGCTGACATGGCACTACTCGAGGCCAAGAAGTTGACATCCCAGTATCAGAAAGAAGCAGATAAGTGCAATTCAGGAATGGAAACTTGTGAAGAAGCTCGTGAAAAAGCTGAAGCAGCCTTACTTGCACAGAAACAACAAAGTGAGATGTGGGAATCAAGAGCCCGGCAGAAAGGCTGGAAGGAAGCCAGCACCAAGTCTGTAAACACTGCATAG 564 45.92 MALNRAGSCNPAVVKIGITFLGLCLVGYLLGPPLYWHVLEGLAAVRRSSSAVSCPTCNCDCDSQPLLTIPQGLSNGSFTDCAKHDPEVSGDTEKNFAELLSEELKLREAEALESQQRADMALLEAKKLTSQYQKEADKCNSGMETCEEAREKAEAALLAQKQQSEMWESRARQKGWKEASTKSVNTA 187
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04487 187 Coils Coil 106 126 - -
Lomi2g04487 187 PANTHER EXPRESSED PROTEIN 1 184 - -
Lomi2g04487 187 MobiDBLite consensus disorder prediction 158 187 - -
Lomi2g04487 187 Pfam Protein of unknown function (DUF1068) 12 178 IPR010471 -
Lomi2g04487 187 Coils Coil 143 163 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04487 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
122971 Lomi2g04487 Lomi5g02198
324011 Lomi2g04487 Lomi1g00180
333466 Lomi1g00180 Lomi2g04487
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:9211960 Lomi2g04487 Lomi-Chr2:49938811 dispersed
Lomi Lomi-Chr2:42613653 Lomi2g04487 Lomi-Chr2:49938811 dispersed
Lomi Lomi-Chr2:49938811 Lomi4g02990 Lomi-Chr4:37067007 dispersed
Lomi Lomi-Chr1:1622948 Lomi2g04487 Lomi-Chr2:49938811 wgd
Lomi Lomi-Chr2:49938811 Lomi5g02198 Lomi-Chr5:32444235 wgd