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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04493 ATGATTTACCTTTTCTTCACGGTTTTATTCGTCGAAATGATTACGATATTATTACTTCTATTCAAAACCCCACTCCGTAAGCTTTTAATATTAGGGTTAGATCGTGCGAAACGTGGCAGGGCACCATTGGTTGTTAAATCCGTCGGAGCCACCGTTTTTGTAATCATGATGTATAACGTTTACAGTGTAACGGAGATTCAAAGCCGGCCTGCTGACGTCCTTAATCCGACCGATCAAATCATACTCGCTTACCATATGCTTGAAGCTTCTCTCATGGGATTCTCGCTTTTCCTGTCACTAATGATAGACAGACTACATCATTACATAAGAGAGCTTCGCATACTTCGAAAGACCATGGAAACTGCAAAGAAACAAAACCGAGCTGCTGAAGAAACCAAGAACAAAGGTGCAGATGAGGTTAAAGTTCTGAATGATGAAATGTCTAAATTGAAAGCGCAGATAAAAAATCTGGAATCTGAATATGCAGCAAAGGAGAAAGAGATTAAATCTGCAGAAGCCAATTCTGTTGCCCTAAAAAATCAATCAGAAGGCTTCCTTCTTGAATATGACCGTTTGCTAGCAGAAAACCAAAATCTTAGAGATCAACTTCGCTCCATTGATGAAAGTGCGTCTCATTCCAATGGAAAGAAGAATATGTGA 660 39.55 MIYLFFTVLFVEMITILLLLFKTPLRKLLILGLDRAKRGRAPLVVKSVGATVFVIMMYNVYSVTEIQSRPADVLNPTDQIILAYHMLEASLMGFSLFLSLMIDRLHHYIRELRILRKTMETAKKQNRAAEETKNKGADEVKVLNDEMSKLKAQIKNLESEYAAKEKEIKSAEANSVALKNQSEGFLLEYDRLLAENQNLRDQLRSIDESASHSNGKKNM 219
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04493 219 Coils Coil 105 181 - -
Lomi2g04493 219 FunFam B-cell receptor-associated protein 29 136 199 - -
Lomi2g04493 219 Coils Coil 189 209 - -
Lomi2g04493 219 Gene3D - 136 199 - -
Lomi2g04493 219 PANTHER BCR-ASSOCIATED PROTEIN, BAP 1 200 IPR008417 GO:0005783(InterPro)|GO:0005789(PANTHER)|GO:0006886(InterPro)|GO:0006888(PANTHER)|GO:0016020(InterPro)|GO:0070973(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04493 K14009 B-cell receptor-associated protein 31
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Event-related genes

Select Gene_1 Gene_2 Event_name
122977 Lomi2g04493 Lomi4g02614
324007 Lomi2g04493 Lomi1g00174
333470 Lomi1g00174 Lomi2g04493
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:37378190 Lomi2g04493 Lomi-Chr2:49991893 dispersed
Lomi Lomi-Chr2:16970072 Lomi2g04493 Lomi-Chr2:49991893 dispersed
Lomi Lomi-Chr2:37252246 Lomi2g04493 Lomi-Chr2:49991893 dispersed
Lomi Lomi-Chr2:49991893 Lomi5g01974 Lomi-Chr5:30869659 dispersed
Lomi Lomi-Chr1:1552959 Lomi2g04493 Lomi-Chr2:49991893 wgd
Lomi Lomi-Chr2:49991893 Lomi3g00751 Lomi-Chr3:6137212 wgd
Lomi Lomi-Chr2:49991893 Lomi4g02614 Lomi-Chr4:33628182 wgd