AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04501 ATGCATATAACCGGACCTCATTCTTCATCTCTTCTCCGACGAGCTTCTAGGTCTTCTTCATCAGCCACCAGGTTTCACTCTTCTATTTCCAATAAATCAACGTCGCCAGCACCGTCAACGTCACCGTCACCGTCGTCACAGCTCCGATCTCATACTACTGCGTCGGCGGCTTTCCGTACCGTACGATCTCGATGGAGTCACGGTGTTGATTGGAAGTCACCGGCTTCGTTGTCTTCTCAGATCAGGACTACTGCTTCTCCTGTGTTAGATCGTTTTCACCGTAGTCTCGCTACTAAAGCCTCTGAGAATGCTTTCAGTGGTATTTTGACTGGTCTCCCTAAGCCTGGAGGTGGAGAGTTTGGAAAGTTCTATAGTTTGCCTGCTCTGAATGATCCAAGAGTTGACAAGCTGCCATATTCAATTAGGATTCTTCTCGAATCAGCAATCCGTAATTGCGACAATTTCCAAGTTACAAAGGAAGATGTCGAGAAGATCATTGATTGGGAGAAGAGTGCACATCAGCAGGTTGAGATTCCATTCAAGCCGGCTCGTGTTCTCTTGCAGGATTTTACTGGTGTACCGGCTGTGGTAGATCTTGCATGTATGCGTGATGCCATGAATAATCTTGGTGGCGACTCCAACAAAATTAATCCGTTGGTTCCCGTGGATCTTGTGATTGATCATTCGGTTCAAGTTGATGTTGCTAGATCTGAAAATGCAGTGAAAGCAAATATGGAACTTGAATTTCAAAGAAACAAGGAGAGATTTGCTTTTCTTAAGTGGGGATCAAAAGCTTTCCAGAACATGCTTGTTGTTCCACCAGGATCTGGTATTGTGCATCAGGTTAACCTTGAATATCTTGGAAGAGTTGTTTTCAACACTGATGGAATGCTATACCCTGATAGTGTTGTTGGGACGGATTCCCACACTACTATGATTGACGGATTAGGTGTTGCTGGTTGGGGAGTTGGAGGAATTGAAGCAGAGGCCGCAATGCTTGGGCAGCCAATGAGCATGGTTTTGCCTGGTGTTGTCGGGTTCAAGTTATCAGGGAAACTGCGCAATGGTGTAACAGCTACTGATTTGGTTTTGACTGTCACCCAAATGTTAAGGAAGCACGGTGTTGTTGGGAAATTTGTTGAATTCCATGGGGATGGTGTGGGTAAAATATCACTTGCAGACAGGGCTACTATAGCCAACATGTCTCCCGAGTATGGTGCAACAATGGGCTTCTTCCCGGTCGATCATGTTACTCTTCAGTATCTCAAGTTAACTGGTCGAAGTGATGATACGGTTGCTATGATAGAAGCATACTTACGTGCAAACAATATGTTTATCGACTATAATGAGCCACAACAAGAAAGAGTCTACTCATCTTATTTGAACCTAGACCTTTCGGAAGTAGAACCCTGTATTTCAGGGCCAAAGAGACCTCATGACCGGGTCCCTCTGAAAGACATGAAAGCAGATTGGCATTCTTGCCTTGATAATAAAGTGGGATTCAAGGGCTTTGCAGTACCAAAAGATGCACAAGACAAAGTTGCAAAGTTTGATTTTCATGGACAGCCAGCAGAACTAAGGCATGGCAGTGTTGTGATTGCTGCTATCACAAGTTGCACAAATACATCAAACCCTAGTGTTATGCTCGGGGCAGGTCTTGTTGCCAAAAAGGCCTGTGAATTGGGTCTACAGGTCAAACCATGGGTTAAAACCAGTCTTGCTCCTGGATCTGGAGTTGTTACAAAGTATTTGCTTCAAAGTGGGTTGCAGAAGTATTTGAATGAGCAAGGGTTTAACATTGTTGGATACGGCTGCACAACATGCATTGGCAATTCAGGGGAGTTGGATGAATCTGTTGGTGCTGCAATAGCTGATAATGATATCATTGCATCAGCTGTTCTATCTGGGAATCGAAACTTTGAGGGGCGTGTTCATGCATTGACAAGAGCAAACTATCTTGCATCGCCTCCTTTGGTTGTTGCCTATGCCCTTGCTGGCACGGTTGATATTGATTTTGAAAAAGAACCGATTGGAGTTGGAAAAGATGGAAAGAGCGTTTATTTCAGGGATATCTGGCCCTCTACCGAAGAAATTGCTGAGGCTGTTCAATCAAGTGTTCTGCCTGAGATGTTTAAGAGTACTTACAAATCCATCACTGAAGGAAATCCCATGTGGAATGATCTATCAGTCCCTGAATCCCAGCTATACACATGGGATTCAAACTCTACATACATTCACGAGCCACCTTATTTCAAAAATATGACAATGGACCCCCCTGGGGCCCATGGTGTGAAGGATGCGTATTGCTTGCTCAACTTTGGTGACAGTATCACAACCGATCACATTTCTCCCGCAGGAAGTATTCACAAGGACAGTCCGGCTGCAAAGTTTCTTCTTGAAGGTGGTGTTGATCGCAAAGATTTCAATTCTTATGGCAGTAGACGAGGTAATGATGAAATCATGGCAAGGGGTACTTTTGCCAATATCCGCATTGTCAACAAGCTTTTAAAGGGTGAAGTTGGCCCGCAGACGGTACATATCCCTACAGGAGAGAAACTCTCAGTGTTCGATGCAGCATCAAGGTACAAGGCTTCTGGGCAGGATACAATTGTGTTGGCTGGAGCAGAGTATGGAAGTGGAAGTTCCAGAGATTGGGCTGCCAAGGGTCCTATGTTATTGGGGGTTAAAGCGGTAATTGCAAAAAGCTTTGAGAGGATCCATCGCAGTAATTTAGTAGGTATGGGAATTATACCACTTTGTTTCAAAGCCGGTGAAGATGCAGATACACTACAGTTGACTGGTCATGAACGATATACCATTGACCTTCCAAGCAATGTTAGTGATATTCGACCTGGCCAGGATGTCACTGTCAAAACCGATACCCGAAAATCGTTCACGTGTATCGCTCGATTCGACACTGAGGTGGAATTGGCGTATTTCAATCATGGTGGCATTCTTCCATATGTTATCCGACAACTAGCGGCACAAAAATGA 2994 44.59 MHITGPHSSSLLRRASRSSSSATRFHSSISNKSTSPAPSTSPSPSSQLRSHTTASAAFRTVRSRWSHGVDWKSPASLSSQIRTTASPVLDRFHRSLATKASENAFSGILTGLPKPGGGEFGKFYSLPALNDPRVDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWEKSAHQQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNNLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVKANMELEFQRNKERFAFLKWGSKAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGVGKISLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVAMIEAYLRANNMFIDYNEPQQERVYSSYLNLDLSEVEPCISGPKRPHDRVPLKDMKADWHSCLDNKVGFKGFAVPKDAQDKVAKFDFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFNIVGYGCTTCIGNSGELDESVGAAIADNDIIASAVLSGNRNFEGRVHALTRANYLASPPLVVAYALAGTVDIDFEKEPIGVGKDGKSVYFRDIWPSTEEIAEAVQSSVLPEMFKSTYKSITEGNPMWNDLSVPESQLYTWDSNSTYIHEPPYFKNMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKFLLEGGVDRKDFNSYGSRRGNDEIMARGTFANIRIVNKLLKGEVGPQTVHIPTGEKLSVFDAASRYKASGQDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADTLQLTGHERYTIDLPSNVSDIRPGQDVTVKTDTRKSFTCIARFDTEVELAYFNHGGILPYVIRQLAAQK 997
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04501 997 ProSitePatterns Aconitase family signature 2. 597 610 IPR018136 -
Lomi2g04501 997 MobiDBLite consensus disorder prediction 1 53 - -
Lomi2g04501 997 Gene3D - 695 756 - -
Lomi2g04501 997 SUPERFAMILY Aconitase iron-sulfur domain 117 731 IPR036008 -
Lomi2g04501 997 CDD AcnA-IRP-Swivel 772 942 IPR044137 -
Lomi2g04501 997 ProSitePatterns Aconitase family signature 1. 531 547 IPR018136 -
Lomi2g04501 997 NCBIfam aconitate hydratase AcnA 121 993 IPR006249 -
Lomi2g04501 997 Gene3D Aconitase, domain 4 759 995 IPR015928 -
Lomi2g04501 997 Gene3D Aconitase, domain 3 103 470 IPR015931 -
Lomi2g04501 997 PRINTS Aconitase family signature 535 546 IPR001030 -
Lomi2g04501 997 PRINTS Aconitase family signature 269 277 IPR001030 -
Lomi2g04501 997 PRINTS Aconitase family signature 597 610 IPR001030 -
Lomi2g04501 997 PRINTS Aconitase family signature 298 311 IPR001030 -
Lomi2g04501 997 PRINTS Aconitase family signature 388 401 IPR001030 -
Lomi2g04501 997 PRINTS Aconitase family signature 245 258 IPR001030 -
Lomi2g04501 997 PRINTS Aconitase family signature 374 387 IPR001030 -
Lomi2g04501 997 PRINTS Aconitase family signature 312 327 IPR001030 -
Lomi2g04501 997 PRINTS Aconitase family signature 470 484 IPR001030 -
Lomi2g04501 997 Pfam Aconitase family (aconitate hydratase) 163 666 IPR001030 -
Lomi2g04501 997 FunFam cytoplasmic aconitate hydratase 471 694 - -
Lomi2g04501 997 Gene3D Aconitase, domain 3 471 694 IPR015931 -
Lomi2g04501 997 FunFam Aconitate hydratase 758 995 - -
Lomi2g04501 997 FunFam Aconitate hydratase 103 470 - -
Lomi2g04501 997 Pfam Aconitase C-terminal domain 795 923 IPR000573 -
Lomi2g04501 997 SUPERFAMILY LeuD-IlvD-like 734 993 - -
Lomi2g04501 997 CDD AcnA-IRP 184 668 - -
Lomi2g04501 997 PANTHER ACONITASE-IRON-RESPONSIVE ELEMENT FAMILY MEMBER 101 994 IPR006249 GO:0003994(PANTHER)|GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0006099(PANTHER)|GO:0006101(PANTHER)|GO:0030350(PANTHER)|GO:0051539(PANTHER)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04501 K01681 aconitate hydratase [EC:4.2.1.3]
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
118772 Lomi11g02003 Lomi2g04501
122978 Lomi2g04501 Lomi5g02214
324002 Lomi2g04501 Lomi1g00165
333475 Lomi1g00165 Lomi2g04501
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr2:50066553 Lomi5g01978 Lomi-Chr5:30901523 dispersed
Lomi Lomi-Chr1:1462543 Lomi2g04501 Lomi-Chr2:50066553 wgd
Lomi Lomi-Chr11:28553431 Lomi2g04501 Lomi-Chr2:50066553 wgd
Lomi Lomi-Chr2:50066553 Lomi5g02214 Lomi-Chr5:32543041 wgd