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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04516 ATGAAAATAATCATGGGTTTAAAGATATGTCTCCTTATAACTCTTCTCACTGTAGCATCAGTTGTATCATCTTCATCTGCAGCTCGATGCGGATCCTCCATTCCAATGGCAAAAGTTGATGAAAATCAGGAATCCGTATCTTCAGAAGATGATCAAGTATCAAATAGGGACGATATTCATGAGAGGCTGCTAAGGGCTAATACAAAAGATTATGGACGACCCGATCCTGCACCAACTTTTGTCAAGCCTCCTTTTAAACTCATACCAAACTAA 273 39.19 MKIIMGLKICLLITLLTVASVVSSSSAARCGSSIPMAKVDENQESVSSEDDQVSNRDDIHERLLRANTKDYGRPDPAPTFVKPPFKLIPN 90
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04516 90 PANTHER PROTEIN CASPARIAN STRIP INTEGRITY FACTOR 1-RELATED 1 90 IPR038974 -
Lomi2g04516 90 MobiDBLite consensus disorder prediction 66 90 - -
Lomi2g04516 90 MobiDBLite consensus disorder prediction 39 58 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04516 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
323992 Lomi2g04516 Lomi1g00143
333485 Lomi1g00143 Lomi2g04516
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:1248710 Lomi2g04516 Lomi-Chr2:50250548 wgd