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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04518 ATGGCAGATCAAGTGTTGGAGGGTAGCCAACCAGTTGATCTTTCTAAGCATCCATCAGGAATTGTTCCTACTCTTCAGAACATTGTGTCTACTGTCAATCTCGATTGCAAGCTAGACCTGAAGGCAATTGCACTGCAAGCTCGTAATGCAGAATATAACCCTAAGCGTTTTGCTGCCGTAATCATGAGGATAAGAGAACCGAAAACAACGGCTTTAATTTTTGCTTCTGGAAAAATGGTGTGTACAGGAGCCAAGAGTGAACAGCAGTCAAAACTGGCAGCGCGGAAGTATGCCCGGATAATTCAAAAACTTGGGTTCCCAGCCAAATTTAAGGATTTCAAGATACAGAACATCGTTGGCTCATGTGATGTAAAATTTCCCATTAGACTTGAAGGCCTTGCGTACTCTCATGGTGCCTTTTCAAGTTATGAACCTGAACTGTTCCCGGGACTGATATATCGAATGAAACAACCAAAAATTGTTCTGCTTATCTTTGTTTCGGGGAAGATTGTTCTTACAGGAGCCAAGGTCAGAGACGAGACTTATACTGCTTTTGAGAACATATATCCTGTCCTTACTGAATTCAGAAAAAATCAACAGTGGTACGTTCTCTCTTTACACCCTTGGAAGCAAGTTTTTAGGCAGCAAAATGATGGCCCAGATGGGTCACTATGTGTAGATTTTTGA 687 41.92 MADQVLEGSQPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQWYVLSLHPWKQVFRQQNDGPDGSLCVDF 228
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04518 228 FunFam TATA-box-binding protein 2 114 195 - -
Lomi2g04518 228 CDD TBP-eukaryotes 22 195 IPR033710 GO:0003677(InterPro)|GO:0006352(InterPro)
Lomi2g04518 228 Hamap TATA-box-binding protein [tbp]. 19 198 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Lomi2g04518 228 FunFam TATA-box-binding protein 2 30 113 - -
Lomi2g04518 228 ProSitePatterns Transcription factor TFIID repeat signature. 143 192 IPR030491 -
Lomi2g04518 228 SUPERFAMILY TATA-box binding protein-like 112 200 - -
Lomi2g04518 228 Gene3D - 26 194 IPR012295 -
Lomi2g04518 228 SUPERFAMILY TATA-box binding protein-like 21 114 - -
Lomi2g04518 228 PRINTS Transcription initiation factor TFIID signature 49 68 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Lomi2g04518 228 PRINTS Transcription initiation factor TFIID signature 139 154 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Lomi2g04518 228 PRINTS Transcription initiation factor TFIID signature 115 131 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Lomi2g04518 228 PRINTS Transcription initiation factor TFIID signature 68 86 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Lomi2g04518 228 PRINTS Transcription initiation factor TFIID signature 158 174 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Lomi2g04518 228 PRINTS Transcription initiation factor TFIID signature 25 40 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Lomi2g04518 228 PANTHER TATA-BOX BINDING PROTEIN 9 200 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)|GO:0006352(PANTHER)|GO:0016251(PANTHER)|GO:0140223(PANTHER)
Lomi2g04518 228 Gene3D - 30 115 IPR012295 -
Lomi2g04518 228 Pfam Transcription factor TFIID (or TATA-binding protein, TBP) 23 104 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Lomi2g04518 228 Pfam Transcription factor TFIID (or TATA-binding protein, TBP) 112 195 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04518 K03120 transcription initiation factor TFIID TATA-box-binding protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
122984 Lomi2g04518 Lomi3g00836
122985 Lomi2g04518 Lomi4g02545
122986 Lomi2g04518 Lomi5g02226
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr2:50261742 Lomi3g00836 Lomi-Chr3:6780539 wgd
Lomi Lomi-Chr2:50261742 Lomi4g02545 Lomi-Chr4:33069426 wgd
Lomi Lomi-Chr2:50261742 Lomi5g02226 Lomi-Chr5:32646414 wgd