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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04522 ATGGCGGCTGCATCTTCTTCGCATCTCCATCTTCAATCGCTCTCATTTTCCAAAACCCTAATTACTCAGTCTCCAATCACAACAACACCCAAAACCCTAATTTCATTCAAACCCAATTCAAGAATCACTCCTTTTTCCGTTCGGGCAGTCATATCACAAACCCCGATACAAACCCAACAATTTAATCACTGTTTTACTAAAAAAGATGATGGCTTTTTGTACTGTGAAGGACTTAAAGTTCAAGAAGTAATGGAAGTTGTTGAAAAAAGGCCCTTTTATCTTTACAGTAAACCCCAAATAACAAGAAATGTTGAGGCTTATAAAGATGCTTTAGAAGGATTGAATTCAATTATTGGGTATGCTATTAAAGCTAATAATAATTACATGATTTTACAACATTTGAGGAGTTTGGGGTGTGGTGCTGTTTTGGTTAGTGGGAATGAACTTAGATTAGCACTCCGTGCTGGTTTTGATCCTACAAGGTGTATTTTTAATGGAAATGGGAAGCTTTTGGAGGATCTTGTTCTTGCTGCTCAAGAAGGTGTATTTGTTAACATAGACAGTGAATTTGATTTGGATAATATTGTATCAGCTGCAAGAATTGCTGGAAAGAAGGTTAATGTACTGCTTCGAATAAATCCGGATGTTGACCCTCAGGTCCATCCTTATGTTGCAACGGGGAACAAGAACTCAAAATTTGGAATAAGAAATGAGAAACTGCAATGGTTTTTAGATGCCGTTAAGTCTTATCCTGATGAACTTAAGTTGGTTGGAGCTCATTGCCATCTTGGATCTACCATTACAAAGGTTGACATATTCAGAGATGCTGCAGCCATTATGGTGAAGTTTATTGATGAAATTCGAGAACAAGGGTTTGATATTAGTTATTTGAACATTGGCGGTGGTCTCGGGATCGATTATTATCATAAGGGTACCATCCTTCCAACACCAAGAGATCTCATTGACACAGTCCGGGAGCTAGTTAAGTCTCGAAACCTTAATCTAATCATTGAGCCAGGAAGGTCACTGATTGCAAATACATGCTGTTTGGTCAATCGTGTCACTGGTGTAAAAACAAACGGCACGAAAAACTTTATTGTGATTGATGGCAGCATGGCTGAACTTATCCGTCCTAGCCTATACGATGCTTATCAACACATAGAACTGGTCTCTCCTCCACCACCTGATTCTCCGGTTACGACTTTTGATGTCGTGGGCCCTGTCTGCGAATCGGCCGATTTCTTGGGAAAGAATAGGGACCTTCCTGCTCCAGCCAGGGGTTCTGGGCTTGTAGTTCATGATGCAGGTGCCTACTGCATGAGCATGGCTTCAACTTACAACCTTAAGATGCGGCCACCTGAATATTGGGTTGAAGAAAATGGATCAGTAGCCAAAATCAGGCATGGGGAGACTTTTCAAGATCATATGAGATTTTTTGAAGGACTCTAA 1449 40.37 MAAASSSHLHLQSLSFSKTLITQSPITTTPKTLISFKPNSRITPFSVRAVISQTPIQTQQFNHCFTKKDDGFLYCEGLKVQEVMEVVEKRPFYLYSKPQITRNVEAYKDALEGLNSIIGYAIKANNNYMILQHLRSLGCGAVLVSGNELRLALRAGFDPTRCIFNGNGKLLEDLVLAAQEGVFVNIDSEFDLDNIVSAARIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKSYPDELKLVGAHCHLGSTITKVDIFRDAAAIMVKFIDEIREQGFDISYLNIGGGLGIDYYHKGTILPTPRDLIDTVRELVKSRNLNLIIEPGRSLIANTCCLVNRVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPPPPDSPVTTFDVVGPVCESADFLGKNRDLPAPARGSGLVVHDAGAYCMSMASTYNLKMRPPEYWVEENGSVAKIRHGETFQDHMRFFEGL 482
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04522 482 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 pyridoxal-P attachment site. 120 138 IPR022653 -
Lomi2g04522 482 PRINTS Diaminopimelate decarboxylase signature 363 381 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Lomi2g04522 482 PRINTS Diaminopimelate decarboxylase signature 446 468 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Lomi2g04522 482 PRINTS Diaminopimelate decarboxylase signature 138 155 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Lomi2g04522 482 PRINTS Diaminopimelate decarboxylase signature 226 235 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Lomi2g04522 482 CDD PLPDE-III-DapDC 91 457 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Lomi2g04522 482 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 99 345 IPR022644 GO:0003824(InterPro)
Lomi2g04522 482 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 signature 2. 291 304 IPR022657 -
Lomi2g04522 482 NCBIfam diaminopimelate decarboxylase 67 476 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Lomi2g04522 482 Hamap Diaminopimelate decarboxylase [lysA]. 77 480 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Lomi2g04522 482 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 90 476 IPR009006 GO:0003824(InterPro)
Lomi2g04522 482 FunFam Diaminopimelate decarboxylase 323 476 - -
Lomi2g04522 482 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 346 436 IPR022643 GO:0003824(InterPro)
Lomi2g04522 482 FunFam Diaminopimelate decarboxylase 97 342 - -
Lomi2g04522 482 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 335 354 IPR000183 GO:0003824(InterPro)
Lomi2g04522 482 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 140 152 IPR000183 GO:0003824(InterPro)
Lomi2g04522 482 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 253 266 IPR000183 GO:0003824(InterPro)
Lomi2g04522 482 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 436 449 IPR000183 GO:0003824(InterPro)
Lomi2g04522 482 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 120 138 IPR000183 GO:0003824(InterPro)
Lomi2g04522 482 Gene3D Alanine racemase 97 342 IPR029066 -
Lomi2g04522 482 SUPERFAMILY Alanine racemase C-terminal domain-like 321 477 IPR009006 GO:0003824(InterPro)
Lomi2g04522 482 PANTHER DIAMINOPIMELATE DECARBOXYLASE 57 479 - GO:0008836(PANTHER)|GO:0009089(PANTHER)|GO:0009507(PANTHER)
Lomi2g04522 482 SUPERFAMILY PLP-binding barrel 90 346 IPR029066 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04522 K01586 diaminopimelate decarboxylase [EC:4.1.1.20]
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Event-related genes

Select Gene_1 Gene_2 Event_name
323989 Lomi2g04522 Lomi1g00138
333488 Lomi1g00138 Lomi2g04522
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:1203843 Lomi2g04522 Lomi-Chr2:50297239 wgd