AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04538 ATGGAAGAAAAATTAATAGAAAGATTAGAGGCCGTTGTAACGCGGCTGGAATCGATCTCTCTGGGCCATTCTCCGCAAGCTGTCTCACTTGACTCTGCATCAGCCTCATCAGAACCGTCGATTGTTGCATTTGATGATCTGATCACAGAGTACGTTGGTAAGGTGTCCGCTATTGGTGACAAGATTGGTGGACAAGTTAAGGATGTTACAAATGTTCTTAGTCAGGCTTTCGCTTCTCAGAAGGAGCTTCTTGTTAAGATCAAACAAACCCAGAAACCCGATGCGGGAGGAATGGCCGAATTTCTCAGGCCATTAAATGAAAAGTTAACCGAAGCAAATAACATGTCAGAAGGACCGCGTTCTGATTTCTTTCATCACTTAAAATCTGCTTCTGAGAGTCTAACTGCTTTAGCATGGATTGCATATACAGGGAAAGATTGCGGAATGAGCATGCCTATTGGACATGTTGAAGACTGTTGGCAGTCAGCCGAATTCTACAGTAACAAGGTTCTTGTTGAATACAAAAATAAAGATGCAGATCATGTGGAATGGGTAAAAGCTCTGAAGGAACTTTATGTACCAGGTTTGAGAGATTACGTGAAGAGTCACTATCCTTTGGGTCCAGTTTGGAGTGCAACAAGGGCTACCATATCGGCTCCAGGAAAATCTTCGAAACAAGGTGCTCCTAGCGCTCCAAATCCTCCACCAGCGTCACTTGCGAGCTCAAGTTCTTCATCAGCATCATCATCTTCATCTAAGCCAAAGCAAGGAATGGCTGCTGTTTTTCAAGAAATTAGTTCAAAGCCTGTTACTGCTGGATTAAGAAAAGTTACAGATGATATGAAGACTAAAAACCGCATAGATAGAGCAGGCTTTGTAACTTCTGGTGAAAAAGAAGTCCGCAAGAGTGCTCCATCAGCTGCTAAAGTTGGACCTTCAAAGCTCGAGCTTGTGATGGGCCGCAAATGGGTTGTTGAGTATCAAATAGGCGTGAAGGATTTATCAATTGATGAGTGTGATCCAAGGCAGACAGTTTATATTTTTGGATGCAAAGATTCAGTTCTACAGATCAAAGGGAAAGTTAATAACATAACTGTTGACAAATGCACGAAAATGGGTGTTGTATTTACGGACGTTGTTGCTGCTTTTGAGATTGTCAATTGTAGTGGGGTTGAGGTGCAATGCCAGGGTGCAGCACCAACAATTTCAATAGACAACACGGCAGGTTGCCAGTTATACTTGAGCAAAGATTCACTCGGTTCTTCTATAACAACTGCTAAGGCAAGTGAAGTTAATGTCATGGTTCCTGCTGAAGATCCTAATGCTGATCTGGCAGAACATGCTTTGCCACAGCAGTACATTCACACGTACCAGGATGGCCACTTTGTTATGACCCCCGTCTCCCACTCTGGAGGGTAA 1419 43.27 MEEKLIERLEAVVTRLESISLGHSPQAVSLDSASASSEPSIVAFDDLITEYVGKVSAIGDKIGGQVKDVTNVLSQAFASQKELLVKIKQTQKPDAGGMAEFLRPLNEKLTEANNMSEGPRSDFFHHLKSASESLTALAWIAYTGKDCGMSMPIGHVEDCWQSAEFYSNKVLVEYKNKDADHVEWVKALKELYVPGLRDYVKSHYPLGPVWSATRATISAPGKSSKQGAPSAPNPPPASLASSSSSSASSSSSKPKQGMAAVFQEISSKPVTAGLRKVTDDMKTKNRIDRAGFVTSGEKEVRKSAPSAAKVGPSKLELVMGRKWVVEYQIGVKDLSIDECDPRQTVYIFGCKDSVLQIKGKVNNITVDKCTKMGVVFTDVVAAFEIVNCSGVEVQCQGAAPTISIDNTAGCQLYLSKDSLGSSITTAKASEVNVMVPAEDPNADLAEHALPQQYIHTYQDGHFVMTPVSHSGG 472
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04538 472 Pfam CAP N-terminal conserved motif 3 38 IPR013992 GO:0003779(InterPro)|GO:0007010(InterPro)
Lomi2g04538 472 Gene3D - 40 214 IPR036222 -
Lomi2g04538 472 MobiDBLite consensus disorder prediction 237 254 - -
Lomi2g04538 472 SUPERFAMILY C-terminal domain of adenylylcyclase associated protein 317 471 IPR036223 -
Lomi2g04538 472 ProSiteProfiles C-CAP-cofactor C-like domain profile. 312 449 IPR017901 -
Lomi2g04538 472 Pfam CAP, N-terminal domain 44 206 IPR053950 -
Lomi2g04538 472 Pfam Adenylate cyclase associated (CAP) C terminal 312 469 IPR013912 GO:0003779(InterPro)|GO:0007010(InterPro)
Lomi2g04538 472 SMART carp 350 387 IPR006599 -
Lomi2g04538 472 SMART carp 388 425 IPR006599 -
Lomi2g04538 472 FunFam Adenylyl cyclase-associated protein 311 471 - -
Lomi2g04538 472 MobiDBLite consensus disorder prediction 217 254 - -
Lomi2g04538 472 ProSitePatterns CAP protein signature 1. 5 17 IPR018106 -
Lomi2g04538 472 PANTHER ADENYLYL CYCLASE-ASSOCIATED PROTEIN 2 470 IPR001837 GO:0003779(InterPro)|GO:0003779(PANTHER)|GO:0005737(PANTHER)|GO:0007010(InterPro)|GO:0007015(PANTHER)|GO:0008179(PANTHER)|GO:0019933(PANTHER)
Lomi2g04538 472 Gene3D - 311 471 IPR016098 -
Lomi2g04538 472 FunFam Adenylyl cyclase-associated protein 40 215 - -
Lomi2g04538 472 SUPERFAMILY N-terminal domain of adenylylcyclase associated protein, CAP 40 236 IPR036222 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04538 K17261 adenylyl cyclase-associated protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
122996 Lomi2g04538 Lomi3g00853
122997 Lomi2g04538 Lomi4g02531
323985 Lomi2g04538 Lomi1g00125
333492 Lomi1g00125 Lomi2g04538
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:1096523 Lomi2g04538 Lomi-Chr2:50425834 wgd
Lomi Lomi-Chr2:50425834 Lomi3g00853 Lomi-Chr3:6944023 wgd
Lomi Lomi-Chr2:50425834 Lomi4g02531 Lomi-Chr4:32920938 wgd