Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lomi2g04538 | ATGGAAGAAAAATTAATAGAAAGATTAGAGGCCGTTGTAACGCGGCTGGAATCGATCTCTCTGGGCCATTCTCCGCAAGCTGTCTCACTTGACTCTGCATCAGCCTCATCAGAACCGTCGATTGTTGCATTTGATGATCTGATCACAGAGTACGTTGGTAAGGTGTCCGCTATTGGTGACAAGATTGGTGGACAAGTTAAGGATGTTACAAATGTTCTTAGTCAGGCTTTCGCTTCTCAGAAGGAGCTTCTTGTTAAGATCAAACAAACCCAGAAACCCGATGCGGGAGGAATGGCCGAATTTCTCAGGCCATTAAATGAAAAGTTAACCGAAGCAAATAACATGTCAGAAGGACCGCGTTCTGATTTCTTTCATCACTTAAAATCTGCTTCTGAGAGTCTAACTGCTTTAGCATGGATTGCATATACAGGGAAAGATTGCGGAATGAGCATGCCTATTGGACATGTTGAAGACTGTTGGCAGTCAGCCGAATTCTACAGTAACAAGGTTCTTGTTGAATACAAAAATAAAGATGCAGATCATGTGGAATGGGTAAAAGCTCTGAAGGAACTTTATGTACCAGGTTTGAGAGATTACGTGAAGAGTCACTATCCTTTGGGTCCAGTTTGGAGTGCAACAAGGGCTACCATATCGGCTCCAGGAAAATCTTCGAAACAAGGTGCTCCTAGCGCTCCAAATCCTCCACCAGCGTCACTTGCGAGCTCAAGTTCTTCATCAGCATCATCATCTTCATCTAAGCCAAAGCAAGGAATGGCTGCTGTTTTTCAAGAAATTAGTTCAAAGCCTGTTACTGCTGGATTAAGAAAAGTTACAGATGATATGAAGACTAAAAACCGCATAGATAGAGCAGGCTTTGTAACTTCTGGTGAAAAAGAAGTCCGCAAGAGTGCTCCATCAGCTGCTAAAGTTGGACCTTCAAAGCTCGAGCTTGTGATGGGCCGCAAATGGGTTGTTGAGTATCAAATAGGCGTGAAGGATTTATCAATTGATGAGTGTGATCCAAGGCAGACAGTTTATATTTTTGGATGCAAAGATTCAGTTCTACAGATCAAAGGGAAAGTTAATAACATAACTGTTGACAAATGCACGAAAATGGGTGTTGTATTTACGGACGTTGTTGCTGCTTTTGAGATTGTCAATTGTAGTGGGGTTGAGGTGCAATGCCAGGGTGCAGCACCAACAATTTCAATAGACAACACGGCAGGTTGCCAGTTATACTTGAGCAAAGATTCACTCGGTTCTTCTATAACAACTGCTAAGGCAAGTGAAGTTAATGTCATGGTTCCTGCTGAAGATCCTAATGCTGATCTGGCAGAACATGCTTTGCCACAGCAGTACATTCACACGTACCAGGATGGCCACTTTGTTATGACCCCCGTCTCCCACTCTGGAGGGTAA | 1419 | 43.27 | MEEKLIERLEAVVTRLESISLGHSPQAVSLDSASASSEPSIVAFDDLITEYVGKVSAIGDKIGGQVKDVTNVLSQAFASQKELLVKIKQTQKPDAGGMAEFLRPLNEKLTEANNMSEGPRSDFFHHLKSASESLTALAWIAYTGKDCGMSMPIGHVEDCWQSAEFYSNKVLVEYKNKDADHVEWVKALKELYVPGLRDYVKSHYPLGPVWSATRATISAPGKSSKQGAPSAPNPPPASLASSSSSSASSSSSKPKQGMAAVFQEISSKPVTAGLRKVTDDMKTKNRIDRAGFVTSGEKEVRKSAPSAAKVGPSKLELVMGRKWVVEYQIGVKDLSIDECDPRQTVYIFGCKDSVLQIKGKVNNITVDKCTKMGVVFTDVVAAFEIVNCSGVEVQCQGAAPTISIDNTAGCQLYLSKDSLGSSITTAKASEVNVMVPAEDPNADLAEHALPQQYIHTYQDGHFVMTPVSHSGG | 472 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lomi2g04538 | 472 | Pfam | CAP N-terminal conserved motif | 3 | 38 | IPR013992 | GO:0003779(InterPro)|GO:0007010(InterPro) | |
| Lomi2g04538 | 472 | Gene3D | - | 40 | 214 | IPR036222 | - | |
| Lomi2g04538 | 472 | MobiDBLite | consensus disorder prediction | 237 | 254 | - | - | |
| Lomi2g04538 | 472 | SUPERFAMILY | C-terminal domain of adenylylcyclase associated protein | 317 | 471 | IPR036223 | - | |
| Lomi2g04538 | 472 | ProSiteProfiles | C-CAP-cofactor C-like domain profile. | 312 | 449 | IPR017901 | - | |
| Lomi2g04538 | 472 | Pfam | CAP, N-terminal domain | 44 | 206 | IPR053950 | - | |
| Lomi2g04538 | 472 | Pfam | Adenylate cyclase associated (CAP) C terminal | 312 | 469 | IPR013912 | GO:0003779(InterPro)|GO:0007010(InterPro) | |
| Lomi2g04538 | 472 | SMART | carp | 350 | 387 | IPR006599 | - | |
| Lomi2g04538 | 472 | SMART | carp | 388 | 425 | IPR006599 | - | |
| Lomi2g04538 | 472 | FunFam | Adenylyl cyclase-associated protein | 311 | 471 | - | - | |
| Lomi2g04538 | 472 | MobiDBLite | consensus disorder prediction | 217 | 254 | - | - | |
| Lomi2g04538 | 472 | ProSitePatterns | CAP protein signature 1. | 5 | 17 | IPR018106 | - | |
| Lomi2g04538 | 472 | PANTHER | ADENYLYL CYCLASE-ASSOCIATED PROTEIN | 2 | 470 | IPR001837 | GO:0003779(InterPro)|GO:0003779(PANTHER)|GO:0005737(PANTHER)|GO:0007010(InterPro)|GO:0007015(PANTHER)|GO:0008179(PANTHER)|GO:0019933(PANTHER) | |
| Lomi2g04538 | 472 | Gene3D | - | 311 | 471 | IPR016098 | - | |
| Lomi2g04538 | 472 | FunFam | Adenylyl cyclase-associated protein | 40 | 215 | - | - | |
| Lomi2g04538 | 472 | SUPERFAMILY | N-terminal domain of adenylylcyclase associated protein, CAP | 40 | 236 | IPR036222 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lomi2g04538 | K17261 | adenylyl cyclase-associated protein |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 122996 | Lomi2g04538 | Lomi3g00853 | |
| 122997 | Lomi2g04538 | Lomi4g02531 | |
| 323985 | Lomi2g04538 | Lomi1g00125 | |
| 333492 | Lomi1g00125 | Lomi2g04538 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lomi | Lomi-Chr1:1096523 | Lomi2g04538 | Lomi-Chr2:50425834 | wgd | |
| Lomi | Lomi-Chr2:50425834 | Lomi3g00853 | Lomi-Chr3:6944023 | wgd | |
| Lomi | Lomi-Chr2:50425834 | Lomi4g02531 | Lomi-Chr4:32920938 | wgd |