AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04543 ATGGGTTCTGGATTTTCATTTTGGGTTCTTTTCCTTCTTTTTTCTCGAATGCATGTGGAAGGAGATGGAGCTACACAAGATAATGTCATAAGACTTAATACCATAGAAGATGATGGTCATGATGTACACCATCATCATGATCCTATCCATCAACATGGTCATGGTCATCATCCATCATCATCATCCACAAATCAAAAAGACCCTCAACTCATGGTCTTCTACATGCTACAAGATCTAAAAGTAGGCCAAGTTAGACCAATTCACTTCCCAAACCGACACCTTTCACCGTCTCAATTGTTGTCCAAACACGAAGCTGATAACATCCCTTTTTCGCTCGTTGAATTACCAAACCTTTTTCGGTTATTCTCAATTTCACAAGGCTCCCCACAAGCTATAGCCATGGAAAGCACACTCAAAGAATGTGAAGTCAAGCCCATCAAGGAAGGTGAAGATGGTGATTTGGTTGAGGCCTTGAGTGTTTGTCACATGGATACGTCTCAATGGAACCGTAATCATGTCTCGTTTGGTGTGCTTGGAGTCGAGCCAGGAACCACCTCGGTTTGCCACTTCTTTCCTAGCGATCATTTCGTGTTCATACCTTCTTCTGCAACCATTTAA 618 42.23 MGSGFSFWVLFLLFSRMHVEGDGATQDNVIRLNTIEDDGHDVHHHHDPIHQHGHGHHPSSSSTNQKDPQLMVFYMLQDLKVGQVRPIHFPNRHLSPSQLLSKHEADNIPFSLVELPNLFRLFSISQGSPQAIAMESTLKECEVKPIKEGEDGDLVEALSVCHMDTSQWNRNHVSFGVLGVEPGTTSVCHFFPSDHFVFIPSSATI 205
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04543 205 ProSiteProfiles BURP domain profile. 145 201 IPR004873 -
Lomi2g04543 205 SMART BURP-2 71 201 IPR004873 -
Lomi2g04543 205 MobiDBLite consensus disorder prediction 40 64 - -
Lomi2g04543 205 Pfam BURP domain 149 199 IPR004873 -
Lomi2g04543 205 Pfam BURP domain 72 150 IPR004873 -
Lomi2g04543 205 PANTHER BURP DOMAIN PROTEIN USPL1-LIKE 149 201 IPR044816 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04543 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr2:50459507 Lomi2g04544 Lomi-Chr2:50478109 tandem
Lomi Lomi-Chr1:1035370 Lomi2g04543 Lomi-Chr2:50459507 wgd