Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lomi2g04546 | ATGTCGATTTTAGGTTCAAATCTGCCAAGCGAGCTTGGTCTGAAATTGCTTCTGAGCCCACTCGGTTCTAACGTTCTCCTAAAAACAGCATGTTGTTCTGTGGGAGTTGTTTTGCCTGTTTATTCTACTTGTAAAGCAATTGAGTCGAATAATAGAACTGAGCAACAAAAGTGGCTTGTATATTGGGCAGCATATGGTACTTTTAGCGTTGCAGAAATGTTTACTGATAAACTTATATCATGGGTTCCACTTTACCATCACATCAAGTTTGCTTTTCTTGTCTGGCTTCAGTTTCCCACTACGAACGGTGCTAAACTCATATACATGAGTCACTTACGCCCTTTCCTTTTAAAGCATCAATCTAACCTTGATCTAATGGTGGCATTCTTGTACAGCGAAACGGGTAAATTCATTAGTGCCTACAAAGGAGAAATTCGATTTGTTAAGGCAGTTGGGACGAAGATTCTGATGTCAGCGAAGCAATTTGTCAACGATAGCAGTCAAACCGTCCCACCGGTCCCACCACCTGAGGGAAGAGCAATCACAGGCCAATCAGAACAAGTAGAGAGCTCTGACTCTAATGACAATGATGCTGCTGATGGTGATGAAGATGGTTATGTAACCATCCCTGCAACTTAA | 639 | 41.94 | MSILGSNLPSELGLKLLLSPLGSNVLLKTACCSVGVVLPVYSTCKAIESNNRTEQQKWLVYWAAYGTFSVAEMFTDKLISWVPLYHHIKFAFLVWLQFPTTNGAKLIYMSHLRPFLLKHQSNLDLMVAFLYSETGKFISAYKGEIRFVKAVGTKILMSAKQFVNDSSQTVPPVPPPEGRAITGQSEQVESSDSNDNDAADGDEDGYVTIPAT | 212 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lomi2g04546 | 212 | PANTHER | HVA22-LIKE PROTEINS | 35 | 128 | IPR004345 | - | |
| Lomi2g04546 | 212 | MobiDBLite | consensus disorder prediction | 165 | 212 | - | - | |
| Lomi2g04546 | 212 | Pfam | TB2-DP1, HVA22 family | 39 | 115 | IPR004345 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lomi2g04546 | K17279 | receptor expression-enhancing protein 5/6 |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 118795 | Lomi11g02028 | Lomi2g04546 | |
| 122998 | Lomi2g04546 | Lomi5g02243 | |
| 323980 | Lomi2g04546 | Lomi1g00112 | |
| 333497 | Lomi1g00112 | Lomi2g04546 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lomi | Lomi-Chr1:1014358 | Lomi2g04546 | Lomi-Chr2:50497568 | dispersed | |
| Lomi | Lomi-Chr2:50497568 | Lomi5g00699 | Lomi-Chr5:9176298 | dispersed | |
| Lomi | Lomi-Chr11:28847246 | Lomi2g04546 | Lomi-Chr2:50497568 | wgd | |
| Lomi | Lomi-Chr2:50497568 | Lomi5g02243 | Lomi-Chr5:32794602 | wgd |