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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04546 ATGTCGATTTTAGGTTCAAATCTGCCAAGCGAGCTTGGTCTGAAATTGCTTCTGAGCCCACTCGGTTCTAACGTTCTCCTAAAAACAGCATGTTGTTCTGTGGGAGTTGTTTTGCCTGTTTATTCTACTTGTAAAGCAATTGAGTCGAATAATAGAACTGAGCAACAAAAGTGGCTTGTATATTGGGCAGCATATGGTACTTTTAGCGTTGCAGAAATGTTTACTGATAAACTTATATCATGGGTTCCACTTTACCATCACATCAAGTTTGCTTTTCTTGTCTGGCTTCAGTTTCCCACTACGAACGGTGCTAAACTCATATACATGAGTCACTTACGCCCTTTCCTTTTAAAGCATCAATCTAACCTTGATCTAATGGTGGCATTCTTGTACAGCGAAACGGGTAAATTCATTAGTGCCTACAAAGGAGAAATTCGATTTGTTAAGGCAGTTGGGACGAAGATTCTGATGTCAGCGAAGCAATTTGTCAACGATAGCAGTCAAACCGTCCCACCGGTCCCACCACCTGAGGGAAGAGCAATCACAGGCCAATCAGAACAAGTAGAGAGCTCTGACTCTAATGACAATGATGCTGCTGATGGTGATGAAGATGGTTATGTAACCATCCCTGCAACTTAA 639 41.94 MSILGSNLPSELGLKLLLSPLGSNVLLKTACCSVGVVLPVYSTCKAIESNNRTEQQKWLVYWAAYGTFSVAEMFTDKLISWVPLYHHIKFAFLVWLQFPTTNGAKLIYMSHLRPFLLKHQSNLDLMVAFLYSETGKFISAYKGEIRFVKAVGTKILMSAKQFVNDSSQTVPPVPPPEGRAITGQSEQVESSDSNDNDAADGDEDGYVTIPAT 212
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04546 212 PANTHER HVA22-LIKE PROTEINS 35 128 IPR004345 -
Lomi2g04546 212 MobiDBLite consensus disorder prediction 165 212 - -
Lomi2g04546 212 Pfam TB2-DP1, HVA22 family 39 115 IPR004345 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04546 K17279 receptor expression-enhancing protein 5/6
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Event-related genes

Select Gene_1 Gene_2 Event_name
118795 Lomi11g02028 Lomi2g04546
122998 Lomi2g04546 Lomi5g02243
323980 Lomi2g04546 Lomi1g00112
333497 Lomi1g00112 Lomi2g04546
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:1014358 Lomi2g04546 Lomi-Chr2:50497568 dispersed
Lomi Lomi-Chr2:50497568 Lomi5g00699 Lomi-Chr5:9176298 dispersed
Lomi Lomi-Chr11:28847246 Lomi2g04546 Lomi-Chr2:50497568 wgd
Lomi Lomi-Chr2:50497568 Lomi5g02243 Lomi-Chr5:32794602 wgd