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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04553 ATGGGTATATGTGCATCAAACCACTTCTCCAAACACCAACAAACTTTATTCATCAGTAGCGGCCCATCATCAGCCACGAAAGTGATCATAATCAACTCAATCGACGGAAATTTACAAGAGCTCCGTCAACCAATCAAAGCAAGCCACGTACTCTCCCAACATCCAAACAATAACTTCTTCCTATGCAGTTCCGAATACATGTTTGTTAACCATCACGTGCCTCACGTGCCGGAAAACGAAGATCTCCAACCGGGTCAAATTTATTTTATTATGCCGGTTTCAAAATCGCGTAAACCGCTTTCGTTACAAGAACTTTGTTCATTGGCGATTAAAGCGAGTTTAGCGATTGAAAAAAATTTAAAAATGACAAATGGGAAGACGGCGTCGTTTGGTGGGAGGCGTAAAAGGAATGAGAATACAAAGGTGGATTTCCAGCTGGCCCTGAAGCAGCTTGGTTGA 459 42.48 MGICASNHFSKHQQTLFISSGPSSATKVIIINSIDGNLQELRQPIKASHVLSQHPNNNFFLCSSEYMFVNHHVPHVPENEDLQPGQIYFIMPVSKSRKPLSLQELCSLAIKASLAIEKNLKMTNGKTASFGGRRKRNENTKVDFQLALKQLG 152
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04553 152 PANTHER DUF4228 DOMAIN PROTEIN-RELATED 28 133 - -
Lomi2g04553 152 Pfam PADRE domain 1 135 IPR025322 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04553 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
118801 Lomi11g02033 Lomi2g04553
323974 Lomi2g04553 Lomi1g00106
333503 Lomi1g00106 Lomi2g04553
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr2:50540486 Lomi2g04554 Lomi-Chr2:50543324 tandem
Lomi Lomi-Chr1:978987 Lomi2g04553 Lomi-Chr2:50540486 wgd
Lomi Lomi-Chr11:28894704 Lomi2g04553 Lomi-Chr2:50540486 wgd
Lomi Lomi-Chr2:50540486 Lomi6g00820 Lomi-Chr6:9267018 wgd
Lomi Lomi-Chr2:50540486 Lomi9g01375 Lomi-Chr9:25944117 wgd