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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04554 ATGGGCATTTGCACCTCATGCTACACCGGTTCCACCGCCACAACCACCGTCAAACTCATCCTTTCAGACGGTCAACTTAGAGAATTCCGGTCACCGGTAAAGGCGTTGACGGTTGCGCAACAACCGTGTTCGTTCATTTGCAACGCTGATGAGATGGACTTTAATGAATATGTAACGGCCATGAGTGAACAAGATGAACTTCAGCCCGGTCAACTTTACTTCGAGCTACCATCGAGTTGGTCAAACAAGCGGTTGACTGTGGACGATATGGTTTCGTTAGCGGTTAAAGCCGGTAAGGCACTTATGGTCAACGATGGTAAAGTGAGATGTGGTTGTTGTGTTAAACGGGTTGACCCGTTGGTATTTTGTGATGAAAATGAGACGATGGCGTCATCATGTGGTAGGGTTGGAGGTGGTGGTGATATCGGGAACCACCGTGGTAGCGGTGGTGGTAAACGGCGGTTGGTTACAAGGCTTGAAAGGATAGTAGAATAA 495 48.28 MGICTSCYTGSTATTTVKLILSDGQLREFRSPVKALTVAQQPCSFICNADEMDFNEYVTAMSEQDELQPGQLYFELPSSWSNKRLTVDDMVSLAVKAGKALMVNDGKVRCGCCVKRVDPLVFCDENETMASSCGRVGGGGDIGNHRGSGGGKRRLVTRLERIVE 164
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04554 164 PANTHER DUF4228 DOMAIN PROTEIN-RELATED 14 115 - -
Lomi2g04554 164 Pfam PADRE domain 1 107 IPR025322 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04554 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr10:8523704 Lomi2g04554 Lomi-Chr2:50543324 dispersed
Lomi Lomi-Chr12:9068734 Lomi2g04554 Lomi-Chr2:50543324 dispersed
Lomi Lomi-Chr1:978987 Lomi2g04554 Lomi-Chr2:50543324 dispersed
Lomi Lomi-Chr2:50543324 Lomi9g01375 Lomi-Chr9:25944117 dispersed
Lomi Lomi-Chr2:50540486 Lomi2g04554 Lomi-Chr2:50543324 tandem