AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04555 ATGAAATACAATGAGATATCCCATTTTATCCACCCTCAACACCGGCTCAAACATGGATACACCGAGGTCCCTTTCAAGTGCGATGGATGCAAAGAAGTCGGTATAGGGTCCAACTATAAATGCACAAAGTGCAACTACGACTTACATGTCCATTGTGCTCTCCCATCCCCGTCCATCACCCACCCTTTTTATACCAAGTGTTCCTTTCAATTCCTAGCTCGCCCGCCAGGGCCCATAGCCCGTTATTGCAACGCATGTGAGAAAGTTGTGTCAGGGTTTGTTTACCATTGTAAGTTGTGTGGGTTCGACCTCCACCCATGTTGTGCCAAACTTCCAACTATGTTGGACGATGGTGAGGTGGAGTTGTATTTGTATAGAAAAGTAGGGTCCGCCTGTCATAGATGTGGTAGGAAAGGACGAAGTTGGAGTTACAGGTCCACGTGCAAGAAGTACAACTTGCACGTGGCCTGTGTGAAAGAGATGTTGGTGGAAAGTTGGCATGAGATATACTTTGGTAGGGATATGGGTGGGGCGAAAGGTAATTTAAGTGGTCACTTGTTTGGCCAAAGTAGTAAAATTGAGACACGAATCCCAAGCTTGAAGGGTACATTGGAAAGTTATCACCATAATCATCAAAGCAAAGGGAAAGTGAAAAAGTGTTGTGAGATGGCTGGTTTGGCTATGCAGTTTGTAATATCAGCAGTTCTTGGTGATCCCACTACTCTAATTGCTGGTGTTGTTGGTTCTTTAATGTCTAAATAG 762 44.62 MKYNEISHFIHPQHRLKHGYTEVPFKCDGCKEVGIGSNYKCTKCNYDLHVHCALPSPSITHPFYTKCSFQFLARPPGPIARYCNACEKVVSGFVYHCKLCGFDLHPCCAKLPTMLDDGEVELYLYRKVGSACHRCGRKGRSWSYRSTCKKYNLHVACVKEMLVESWHEIYFGRDMGGAKGNLSGHLFGQSSKIETRIPSLKGTLESYHHNHQSKGKVKKCCEMAGLAMQFVISAVLGDPTTLIAGVVGSLMSK 253
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04555 253 ProSiteProfiles Zinc finger phorbol-ester-DAG-type profile. 13 67 IPR002219 -
Lomi2g04555 253 SUPERFAMILY Cysteine-rich domain 30 114 IPR046349 -
Lomi2g04555 253 Pfam C1 domain 74 109 IPR004146 -
Lomi2g04555 253 Pfam C1 domain 10 53 IPR004146 -
Lomi2g04555 253 Gene3D - 12 58 - -
Lomi2g04555 253 PANTHER CYSTEINE-HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN 2 251 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04555 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
123000 Lomi2g04555 Lomi3g00867
123001 Lomi2g04555 Lomi4g02514
323973 Lomi2g04555 Lomi1g00105
333504 Lomi1g00105 Lomi2g04555
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:974199 Lomi2g04555 Lomi-Chr2:50547530 wgd
Lomi Lomi-Chr2:50547530 Lomi3g00867 Lomi-Chr3:7062994 wgd
Lomi Lomi-Chr2:50547530 Lomi4g02514 Lomi-Chr4:32816288 wgd