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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi2g04563 ATGGCAACAGCCTCAGCCACCCTATCTCCGGTCAACTTCACTGTGGTTGCACCCACCAGGACTTCTGGTAGAACCACCACCACCACCACCACAACAAAGGTGAGTTACATCAAGGGTATGAACTCATTTGGTGGGCTTAAAGCCCATAACACTGTGGCTGCATTGGGCCTTTCTGTTTGCACTGAACAACAATTTGCAAACATTGTTTCTTCATTGAAGAAACCATCATCATCATCTAATGGTGGTGCACTCACTTCCACTTGTAGTGCAGTTGCTGAGATTTTTAAAATTGCTGCTATCATGAATGGACTTACTCTTATTGGAGTTGCAGTTGGTTTTGTTCTTCTTCGAATCGAAGCGGCTGTTGAAGAAGCAGAGTAA 381 44.62 MATASATLSPVNFTVVAPTRTSGRTTTTTTTTKVSYIKGMNSFGGLKAHNTVAALGLSVCTEQQFANIVSSLKKPSSSSNGGALTSTCSAVAEIFKIAAIMNGLTLIGVAVGFVLLRIEAAVEEAE 126
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi2g04563 126 Pfam PetM family of cytochrome b6f complex subunit 7 93 119 IPR012595 GO:0009512(InterPro)
Lomi2g04563 126 Hamap Cytochrome b6-f complex subunit 7 [petM]. 90 122 IPR012595 GO:0009512(InterPro)
Lomi2g04563 126 SUPERFAMILY PetM subunit of the cytochrome b6f complex 91 123 - -
Lomi2g04563 126 PANTHER B6F COMPLEX SUBUNIT, PUTATIVE, EXPRESSED-RELATED 1 126 IPR053333 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi2g04563 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
323967 Lomi2g04563 Lomi1g00098
333510 Lomi1g00098 Lomi2g04563
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr1:926516 Lomi2g04563 Lomi-Chr2:50588692 wgd