AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi3g01845 ATGGGAACAGAAGTACACTGCAAAAGCTCTTTTGAAGGGTATCACTCCATGAGGGATGTTAATGAGGATTCCAATAGTAGCAGCTGGCCTGTTTTTTATGGAGATAAACCTTTGACGCCTAATGGCGGCCATTATTACAACGGTTTCATACCAAGGACCATTTCAGATACATATCCAGGGTGTGAGAAGGATGCATTAAAGCAAAAGATGCTTGAACATGAAGCCATCTTCAAAAATCAGGTTTATGAACTTCATCGTCTTTATAGAAGACAAAGAGACATGATGGAAGAAGTTAAAAGAAAGGAGTACCATAAGCATCGGATTTCTATGGACACATCATCATCTTCAAGTCTCTTGCCGTCACAAAAGCCTTACGAAGATGGACACAAATGGCAAATACCAAGCTTTCCTTTGACCAACTCCAATTCCGCCAGACCATCTATTTTTGGAGCAGAGATAAATAATTCACCTTTAAGTTGTTCAAAAGGGAATGAAAATAATAATAATAATAGTTCAAAGGATTGTGAAATCATGGAATGTAGTAGACCTTCAAAAGTTAGAAAAAAGTTATTCGATCTTGAACTCCCTCCTGATGAAAACATTGACCATGATGAACACGAGGAAATTCAATATAAACAGGCTTCTGCAGAATCGAGTTATAAAGATACTTCATCGGGTCAATGTTTTAGGGGTTCTAATGGATTGGCTGATCTTAATGAACCTGTCCATGTTGAAGAAGTAATGGCTCATGGGTCGGTTGATCGTTTTGGTCCTTCGGCTAAAAGTGGGTCACCATTTTTTGGCCCAATGCATAATCTCTCTCAAAGTGGACAGCCTAGTAGTGCTTTTAACCATTTATTGCCCGAGGGAAAAAGCAATGGAAGAGATTGGTTGTCAAATGCGCGTGAACAAGGAAATAATAGAAGCAACCTGAACTTCACGCCAGGAACGTATCCCGAAATTCCAACAAGAATTCAGGATCATCCCCATTTTAGCCAAACCCCTTTACCGTTTCCGACTTCACGTACACCTAGTTCATACCCTTACACAGATATGGGAAATTCATGGGGAAAACCGAATGGTAGTTTGACTCATAAGTTGACCTCATTTCAGAAACAACCCTCTTTTGTACCGTCTCCACAAAGTCATCCCGTTTTCGGAGATAAATGGCGTACAAATGGATTTTCTACACCAAATGGAATTTACCGTGGGTTGTCATCCGGGTCAAAAGATCCATATGCCCGTCTGCCTTCTGTTGGGTTTGATAACCGACAGTGCAGTAATCTGGATGATAGGTCACAAAAGATCTTCAAAGCTTCAAACTTTATCGATTTGACTGATACTACCAAAGGCATTGACTTGAACAACGACAGCAATAGTGAAAGAAAATGCGATCAAACAGTACCCTCATGGCTTCAAGCCAAGCCAGCAATCTGTAAAAATGATACTTCGGGTAATAATGGAAAGATTCTCAGGTTTCCAGCTTTTGGGAATTCTTGTGCTGCGAAAAATGATTCTTCGTCACTGGTATCCACTTCAGCGTCCCTTCTTTGTCCTGAAAATGGAAAAATAAAAACAGAAATGGAACACAAAGGGTTTGACATCAATGTGGCTTATGTGGAAGCTTGTAATGTTGAGAGAGAAACTGATACAGAAATTGAGAAAATCAAGAATCATTTTGACTTAAATTCGTGCTTGACCGAGGAGGAAGATGTTCTACTATCCGAGTCTGTTAAAAGTTCAAGTCAGAACTCAAAGAAGAAAACATTCGACATCGACTTAGAAGCTCCAGCTGAGGAAGAAGCCGTCGATGAGGTAAAAAAATCTGACGATTTTGACGATGATTCACTTGCAAAGGTAGCAGCTGAAGCAATAGTTGCGATGACTGGGATATCCTGTCAGCAAGATCAAGCGGGGTCCAGCTCTGAGGTGGCGGTTTGTTCTGACGATCTTGATGATGATCGCCTCTTATTATTAATTGAGGCAATTGAAAATGGGGGTTCAGTTACTACCGAGTTGGATGAATATGAACAGTTGACTTTGCAACTAGAGTTGACCAAAGAAGAAGATTACATGCCAAAGCCTTTGGGACCTGATTTCCGCGAACCCGAAGAAGTGGGCCCGTCAACAGGCCTGACTCGACCCAGAAGAGGTCAAGCAAGGCGTGGTAGGCCCAGGAGGGACTTCCAAAGGGACATCCTTCCCGGGCTGGTTTCACTTTCAAGGCACGAGGTAACTGAAGATATTCAAATATTCGGTGGGTTAATGAGAGCTACAGGGCACTCTTGGAATGTAGGACTGACTAGAAGAAATGGAACACGGGGAAGACGGAAGTCTGTTGCAGTGTCTGTTGAGCCGCCTACTGCCACCACCCCACTATCGCCACCGCTACCATTGTCGGAGGTGGTAGGATTGGAGGAAAGAAGCCTAACAGGGTGGGGTAAGACGACTAGACGACCTCGGAGACAACGATGTGCTGCAGGTAGTAGCTCTGTGGCTGTCCAGTTAACGTAA 2514 42.72 MGTEVHCKSSFEGYHSMRDVNEDSNSSSWPVFYGDKPLTPNGGHYYNGFIPRTISDTYPGCEKDALKQKMLEHEAIFKNQVYELHRLYRRQRDMMEEVKRKEYHKHRISMDTSSSSSLLPSQKPYEDGHKWQIPSFPLTNSNSARPSIFGAEINNSPLSCSKGNENNNNNSSKDCEIMECSRPSKVRKKLFDLELPPDENIDHDEHEEIQYKQASAESSYKDTSSGQCFRGSNGLADLNEPVHVEEVMAHGSVDRFGPSAKSGSPFFGPMHNLSQSGQPSSAFNHLLPEGKSNGRDWLSNAREQGNNRSNLNFTPGTYPEIPTRIQDHPHFSQTPLPFPTSRTPSSYPYTDMGNSWGKPNGSLTHKLTSFQKQPSFVPSPQSHPVFGDKWRTNGFSTPNGIYRGLSSGSKDPYARLPSVGFDNRQCSNLDDRSQKIFKASNFIDLTDTTKGIDLNNDSNSERKCDQTVPSWLQAKPAICKNDTSGNNGKILRFPAFGNSCAAKNDSSSLVSTSASLLCPENGKIKTEMEHKGFDINVAYVEACNVERETDTEIEKIKNHFDLNSCLTEEEDVLLSESVKSSSQNSKKKTFDIDLEAPAEEEAVDEVKKSDDFDDDSLAKVAAEAIVAMTGISCQQDQAGSSSEVAVCSDDLDDDRLLLLIEAIENGGSVTTELDEYEQLTLQLELTKEEDYMPKPLGPDFREPEEVGPSTGLTRPRRGQARRGRPRRDFQRDILPGLVSLSRHEVTEDIQIFGGLMRATGHSWNVGLTRRNGTRGRRKSVAVSVEPPTATTPLSPPLPLSEVVGLEERSLTGWGKTTRRPRRQRCAAGSSSVAVQLT 837
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi3g01845 837 PANTHER TRANSCRIPTION FACTOR, PUTATIVE (DUF863)-RELATED 17 825 - -
Lomi3g01845 837 MobiDBLite consensus disorder prediction 813 837 - -
Lomi3g01845 837 Pfam Plant protein of unknown function (DUF863) 343 456 IPR008581 -
Lomi3g01845 837 Pfam Plant protein of unknown function (DUF863) 461 825 IPR008581 -
Lomi3g01845 837 Pfam Plant protein of unknown function (DUF863) 144 222 IPR008581 -
Lomi3g01845 837 Pfam Plant protein of unknown function (DUF863) 219 319 IPR008581 -
Lomi3g01845 837 Coils Coil 669 689 - -
Lomi3g01845 837 MobiDBLite consensus disorder prediction 105 126 - -
Lomi3g01845 837 MobiDBLite consensus disorder prediction 691 728 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi3g01845 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
321378 Lomi3g01845 Lomi4g01652
328543 Lomi4g01652 Lomi3g01845
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr3:15659098 Lomi8g00934 Lomi-Chr8:8023275 dispersed
Lomi Lomi-Chr12:10118001 Lomi3g01845 Lomi-Chr3:15659098 wgd
Lomi Lomi-Chr3:15659098 Lomi4g01652 Lomi-Chr4:24547377 wgd