AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lomi3g01862 | ATGTCAAACGAAAAGGAAAGAGAAAATCATGTTTACATGGCTAAGCTCGCTGAACAAGCCGAGCGTTATGAAGAGATGGTTGAAAGTATGAAGAGTGTTGCAAAACTAGATGTTGAACTAACTGTCGGAGAGCGCAACCTTCTTTCTGTTGGATACAAGAATGTGATTGGTGCAAGGAGGGCCTCGTGGCGTATTATGTCATCAATTGAACAAAAGGAAGAATCAAAAGGAAATGAAAGCAACGTTAACCTGATTAAGGGCTATCGCAAAAAGGTTGAGGACGAGCTTGCCAAAATTTGCAGTGATATTCTAGAGATCATAGATAAGCATCTGATACCTTCTTCGGACTCAGGAGAAGCTACTGTTTTCTACTACAAGATGAAAGGTGACTACTTTCGGTACCTTGCCGAGTTCAAGACAGACCAGGAAAGGAAGGATGCTGCTGAACAGTCACTGAAGGGCTATGAGGCTGCTGCTGCTGCTGCAAATACAGAACTCCCTTCAACTCACCCAATTCGGCTTGGGCTGGCTCTTAATTTCTCAGTGTTCTACTACGAGATTATGAATTCTCCTGAGAGGGCCTGCCATTTGGCTAAACAAGCCTTTGACGAGGCGATTGCTGAGTTGGACTCATTAAGTGAAGAATCTTATAAAGACAGCACCTTGATCATGCAGCTTTTAAGAGATAACCTCACTCTCTGGACCTCTGATTTGCCAGAGGATGGAGGTGACGAAAACCACTCGAAGGGTGAAGAATCCAAATCAGCTGAACCAGAGGAAAAGCAGTAG | 789 | 43.98 | MSNEKERENHVYMAKLAEQAERYEEMVESMKSVAKLDVELTVGERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNESNVNLIKGYRKKVEDELAKICSDILEIIDKHLIPSSDSGEATVFYYKMKGDYFRYLAEFKTDQERKDAAEQSLKGYEAAAAAANTELPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDSLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGDENHSKGEESKSAEPEEKQ | 262 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lomi3g01862 | 262 | PANTHER | 14-3-3 PROTEIN | 6 | 240 | IPR000308 | GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER) | |
| Lomi3g01862 | 262 | Gene3D | - | 1 | 248 | IPR036815 | - | |
| Lomi3g01862 | 262 | Coils | Coil | 195 | 215 | - | - | |
| Lomi3g01862 | 262 | SUPERFAMILY | 14-3-3 protein | 6 | 237 | IPR036815 | - | |
| Lomi3g01862 | 262 | FunFam | 14-3-3 protein epsilon | 1 | 248 | - | - | |
| Lomi3g01862 | 262 | Pfam | 14-3-3 protein | 13 | 235 | IPR023410 | - | |
| Lomi3g01862 | 262 | PRINTS | 14-3-3 protein zeta signature | 39 | 68 | IPR000308 | - | |
| Lomi3g01862 | 262 | PRINTS | 14-3-3 protein zeta signature | 208 | 237 | IPR000308 | - | |
| Lomi3g01862 | 262 | PRINTS | 14-3-3 protein zeta signature | 88 | 112 | IPR000308 | - | |
| Lomi3g01862 | 262 | PRINTS | 14-3-3 protein zeta signature | 119 | 141 | IPR000308 | - | |
| Lomi3g01862 | 262 | PRINTS | 14-3-3 protein zeta signature | 154 | 180 | IPR000308 | - | |
| Lomi3g01862 | 262 | PRINTS | 14-3-3 protein zeta signature | 181 | 207 | IPR000308 | - | |
| Lomi3g01862 | 262 | SMART | 1433-4 | 7 | 248 | IPR023410 | - | |
| Lomi3g01862 | 262 | MobiDBLite | consensus disorder prediction | 235 | 262 | - | - | |
| Lomi3g01862 | 262 | Coils | Coil | 145 | 165 | - | - | |
| Lomi3g01862 | 262 | ProSitePatterns | 14-3-3 proteins signature 2. | 217 | 236 | IPR023409 | - | |
| Lomi3g01862 | 262 | ProSitePatterns | 14-3-3 proteins signature 1. | 45 | 55 | IPR023409 | - | |
| Lomi3g01862 | 262 | Coils | Coil | 13 | 33 | - | - | |
| Lomi3g01862 | 262 | PIRSF | 14-3-3 | 1 | 252 | IPR000308 | - | |
| Lomi3g01862 | 262 | MobiDBLite | consensus disorder prediction | 240 | 262 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lomi3g01862 | K06630 | 14-3-3 protein epsilon |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 117382 | Lomi10g01529 | Lomi3g01862 | |
| 123360 | Lomi3g01862 | Lomi8g01363 | |
| 321368 | Lomi3g01862 | Lomi4g01635 | |
| 328553 | Lomi4g01635 | Lomi3g01862 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lomi | Lomi-Chr3:15822763 | Lomi5g02101 | Lomi-Chr5:31722746 | dispersed | |
| Lomi | Lomi-Chr10:12918165 | Lomi3g01862 | Lomi-Chr3:15822763 | wgd | |
| Lomi | Lomi-Chr10:11280080 | Lomi3g01862 | Lomi-Chr3:15822763 | wgd | |
| Lomi | Lomi-Chr3:15822763 | Lomi4g01635 | Lomi-Chr4:24411431 | wgd | |
| Lomi | Lomi-Chr3:15822763 | Lomi8g01363 | Lomi-Chr8:13488082 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Lomi1g00331 | ACH,LST | 1 | 263 | 14-3-3 family | AT2G42590 | 77.186 | 9.41e-151 | 419.0 | |
| Lomi2g04337 | ACH,LST | 1 | 263 | 14-3-3 family | AT2G42590 | 77.567 | 1.29e-151 | 421.0 | |
| Lomi3g01862 | ACH,LST | 6 | 267 | 14-3-3 family | AT1G26480 | 83.206 | 1.89e-162 | 449.0 | |
| Lomi3g02403 | . | 1 | 247 | 14-3-3 family | AT5G10450 | 82.996 | 4.89e-156 | 432.0 | |
| Lomi3g02455 | ACH,LST | 3 | 258 | 14-3-3 family | AT1G78300 | 87.109 | 6.31e-162 | 447.0 | |
| Lomi4g01092 | ACH,LST | 3 | 258 | 14-3-3 family | AT1G78300 | 86.719 | 1.83e-162 | 449.0 | |
| Lomi4g01133 | . | 1 | 247 | 14-3-3 family | AT5G10450 | 83.401 | 8.46e-157 | 434.0 | |
| Lomi4g01635 | ACH,LST | 6 | 268 | 14-3-3 family | AT1G26480 | 82.129 | 1.19e-161 | 447.0 | |
| Lomi5g02101 | ACH,LST | 1 | 263 | 14-3-3 family | AT2G42590 | 76.046 | 1.11e-149 | 416.0 | |
| Lomi6g00046 | ACH | 4 | 259 | 14-3-3 family | AT1G78300 | 85.603 | 2.18e-164 | 454.0 | |
| Lomi8g01067 | LST | 3 | 257 | 14-3-3 family | AT3G02520 | 89.804 | 1.50e-166 | 459.0 | |
| Lomi8g01220 | ACH,LST | 2 | 256 | 14-3-3 family | AT1G78300 | 85.547 | 2.47e-161 | 446.0 | |
| Lomi8g01363 | ACH,LST | 6 | 256 | 14-3-3 family | AT1G26480 | 85.259 | 7.67e-162 | 447.0 | |
| Lomi9g00925 | LST | 3 | 259 | 14-3-3 family | AT3G02520 | 89.105 | 2.72e-168 | 464.0 | |
| Lomi9g01581 | ACH,LST | 8 | 262 | 14-3-3 family | AT1G35160 | 86.719 | 5.91e-164 | 452.0 | |
| Lomi10g01100 | LST | 3 | 257 | 14-3-3 family | AT3G02520 | 90.196 | 1.03e-167 | 462.0 | |
| Lomi10g01334 | ACH,LST | 2 | 256 | 14-3-3 family | AT1G78300 | 87.109 | 2.64e-164 | 453.0 | |
| Lomi10g01529 | ACH,LST | 6 | 256 | 14-3-3 family | AT1G26480 | 84.462 | 2.21e-161 | 446.0 | |
| Lomi11g01938 | ACH,LST | 1 | 252 | 14-3-3 family | AT2G42590 | 78.656 | 1.32e-149 | 416.0 | |
| Lomi12g00650 | ACH,LST | 8 | 262 | 14-3-3 family | AT1G35160 | 87.109 | 2.54e-164 | 453.0 | |
| Lomi12g01303 | LST | 4 | 259 | 14-3-3 family | AT3G02520 | 89.062 | 4.35e-167 | 461.0 |