Gene detail

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Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lomi3g01870	ATGGAAGAATCACGCAATCCGTTTCTGCAGTCTAATATTATCGAGTCTGGAAATAGTTACAGCGCGAGATATAATCCTGATAAGCGTGGGCGCCAGAACTTTATCGGGCCTGGTTTTCCGGGGTTAAAGAAACGAGGTCATACTCTTGGAAACCGTTCGTGGATTAAGATTGAACAAAATGGGAACTCGAAAGTTGTGGAGTTAGATAAGGCTACTGTAATGAGACATTGTTCGCTGCCTGCAAGAGATCTTCGTCTTTTGGATCCTCTTTTTATTTATCCGTCTACTATACTAGGCCGTGAGAAAGCTATTGTGGTTAGTCTTGAACAGATTAGATGTATAATCACGGCTGATGAGGTGTTTCTTATGAATTCATTGGATGGATCTGTAGTTCAGTATAAATCTGAATTGTGTAAACGAATTCAGCAAGACAAGTATCACTCAGATGACTTGCCATTCGAGTTTAGGGCATTGGAACTAGCTTTGGAATTTACGTGTCTCACTCTTGATACTCAGGTGAAAGAGTTAGAAATGGAAATTCATCCCGTGCTTGATGAACTAGCAAAATCAATAAGTACTCTCAATCTTGAACGTGTTCGTAGATTTAAAGGCCACCTTCTTGCATTGACTCAACGGGTCCAAAAGGTCTCCGATGAAATAGAACAGCTAATGAATGATGATGGTGATATGGCTGAGATGTATCTGACTGAGAAGAAACAAAGGAACTCATGTAATGATCTTTATGATCAAGTACAAGGAAATAATCTTATTGGGCCAGGAGTGGGATTAGGATCAAAATCTGCTCCTGTATCTCCTGTGGGGTCCTTGAGCGGTGCAAATAACTTGCAAAGGGCGTTTAGTAATGTAAGTGCACATAAACCTGGAAGCTTGTTGAGTTCATCTGTAACTGGTGAAACTGAAAACATTGATCAACTTGAGATGTTGTTGGAAGCGTACTTTGTTGGAATTGACAACACTTTAAACAAGTTGCTTTCGCTCAAGGAATATATAGATGACACTGAAGATCTGATCAACATTAAACTCGGAAATGTTCAGAATAAGCTGATTAAGTTCGAGCTTCTCTTGACTGCTGCTACTTTTTTGGCTACTGTATTTGCTGTTGTGACAGCAGTTTTTGGAATGAACTTCGAAGATGATGTATTTGACGAGCCAAACAGATTTAATTGGGTAGTTTCTATCAGTGCAACACTATGTGGAGTCTTGTATATCTGTTTCTTAATTTATTTCAAACATAAGAAAGTTTTCCCTCTGTAG	1275	39.22	MEESRNPFLQSNIIESGNSYSARYNPDKRGRQNFIGPGFPGLKKRGHTLGNRSWIKIEQNGNSKVVELDKATVMRHCSLPARDLRLLDPLFIYPSTILGREKAIVVSLEQIRCIITADEVFLMNSLDGSVVQYKSELCKRIQQDKYHSDDLPFEFRALELALEFTCLTLDTQVKELEMEIHPVLDELAKSISTLNLERVRRFKGHLLALTQRVQKVSDEIEQLMNDDGDMAEMYLTEKKQRNSCNDLYDQVQGNNLIGPGVGLGSKSAPVSPVGSLSGANNLQRAFSNVSAHKPGSLLSSSVTGETENIDQLEMLLEAYFVGIDNTLNKLLSLKEYIDDTEDLINIKLGNVQNKLIKFELLLTAATFLATVFAVVTAVFGMNFEDDVFDEPNRFNWVVSISATLCGVLYICFLIYFKHKKVFPL	424

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lomi3g01870	424	PANTHER	RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL	39	421	IPR039204	GO:0015095(PANTHER)\|GO:0015693(PANTHER)
	Lomi3g01870	424	SUPERFAMILY	Magnesium transport protein CorA, transmembrane region	361	413	IPR045863	-
	Lomi3g01870	424	CDD	Mrs2-Mfm1p-like	54	421	IPR039204	-
	Lomi3g01870	424	Pfam	Magnesium transporter MRS2-like	59	242	-	-
	Lomi3g01870	424	Gene3D	Magnesium transport protein CorA, transmembrane region	127	355	-	-
	Lomi3g01870	424	Gene3D	Magnesium transport protein CorA, transmembrane region	362	420	-	-
	Lomi3g01870	424	Gene3D	-	44	125	-	-
	Lomi3g01870	424	FunFam	Magnesium transporter MRS2-1	41	125	-	-
	Lomi3g01870	424	Coils	Coil	206	226	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lomi3g01870	K16075	magnesium transporter

Event-related genes

Select	Gene_1	Gene_2	Event_name
	321363	Lomi3g01870	Lomi4g01628
	328558	Lomi4g01628	Lomi3g01870

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	3814775	Lomi	Lomi11g00163	Lomi-Chr11:1816250	Lomi3g01870	Lomi-Chr3:15907051
	3829319	Lomi	Lomi3g01870	Lomi-Chr3:15907051	Lomi5g00190	Lomi-Chr5:2286293
	3891337	Lomi	Lomi3g01870	Lomi-Chr3:15907051	Lomi4g01628	Lomi-Chr4:24356464

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lomi1g03888	LST	19	394	MRS2 gene family	AT5G64560	76.393	0.0	512.0
	Lomi2g00531	ACH,LST	19	386	MRS2 gene family	AT5G09690	74.595	0.0	546.0
	Lomi2g01504	ACH	123	459	MRS2 gene family	AT5G22830	77.515	1.52e-177	503.0
	Lomi2g04012	.	1	436	MRS2 gene family	AT3G58970	67.483	0.0	564.0
	Lomi3g00944	ACH,LST	47	484	MRS2 gene family	AT3G19640	67.181	0.0	579.0
	Lomi3g01870	LST	1	421	MRS2 gene family	AT2G03620	65.197	7.86e-177	498.0
	Lomi4g00374	ACH	1	386	MRS2 gene family	AT5G09690	66.667	1.06e-179	503.0
	Lomi4g01628	LST	1	421	MRS2 gene family	AT2G03620	64.733	1.11e-176	498.0
	Lomi4g02433	ACH,LST	47	484	MRS2 gene family	AT3G19640	68.132	0.0	579.0
	Lomi5g00190	ACH,LST	1	442	MRS2 gene family	AT1G16010	83.221	0.0	728.0
	Lomi5g02321	ACH	47	484	MRS2 gene family	AT3G19640	60.089	5.22e-179	509.0
	Lomi8g00825	ACH,LST	123	459	MRS2 gene family	AT5G22830	81.009	0.0	533.0
	Lomi9g00237	ACH	1	442	MRS2 gene family	AT1G16010	80.537	0.0	686.0
	Lomi10g00738	ACH,LST	123	459	MRS2 gene family	AT5G22830	80.119	0.0	529.0
	Lomi11g00163	ACH,LST	1	442	MRS2 gene family	AT1G16010	82.55	0.0	726.0