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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi3g01874 ATGGCTCTTTTGGAATCAAACAAAAACAGAGGGGAGGTAAGGATTCATGAAAATTTGGATGAACTTAGCACTGATTTAGCTGATTATGTTGCGGAATTATCTGAAGCATCTGTTAAAGAACGTGGCGTTTTCGCCATTGCTTTATCTGGTGGCTCACTTATTAGCTTATTGAGGAATCTGTGTGGAGCTCCATATAACAAGACTGTGGATTGGTCAAAATGGTATATATTTTGGGCAGATGAACGCGTAGTTGCGAAGAATCATGTCGATAGCAACTATAAACTTGCTAAAGATCATCTTTTGTCTAAGTTGCCTATTGTTCCGAGCCATGTACATTCCATCAACGATTCTCTCACTGCAGAAGAAGCTGCTAATGAATACGAGTTTGTGATCAGACAACTAGTCAGAACCCGTGTGGTCAATGTTTCAGACATCAGCGATTTCCCGAAGTTTGACCTCATCCTTCTAGGGATGGGCCCAGATGGCCACGTGGCGTCTTTGTTTCCAAATCATTCGGTTCTTGAAGAAAAGAATGAATGGGTAACATTCATCACCACCTCCCCTAAGCCACCCCCCGAAAGAATCACTTTCACGCTGCCGGTTATCAACTCTGCAGCCAATGTTGCGGTGGTCGTGACAGGTGGTGGAAAAGCGGAAGCTGCCCATCTAGCGATAGAAGATGTAGGGTCAGAGTGCCCGGTTTTGCCAGCTAGGCTGATTGAGCCAGTTGTAGGGAAACTGGTGTGGTTTTTGGATAATCAGGCTGGGTCAAAACTGAAGGGCTTTTCTCAATTTTCTAAGTAG 804 44.4 MALLESNKNRGEVRIHENLDELSTDLADYVAELSEASVKERGVFAIALSGGSLISLLRNLCGAPYNKTVDWSKWYIFWADERVVAKNHVDSNYKLAKDHLLSKLPIVPSHVHSINDSLTAEEAANEYEFVIRQLVRTRVVNVSDISDFPKFDLILLGMGPDGHVASLFPNHSVLEEKNEWVTFITTSPKPPPERITFTLPVINSAANVAVVVTGGGKAEAAHLAIEDVGSECPVLPARLIEPVVGKLVWFLDNQAGSKLKGFSQFSK 267
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi3g01874 267 CDD 6PGL 20 251 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Lomi3g01874 267 PANTHER 6-PHOSPHOGLUCONOLACTONASE 5 260 IPR039104 -
Lomi3g01874 267 FunFam Probable 6-phosphogluconolactonase 8 260 - -
Lomi3g01874 267 SUPERFAMILY NagB-RpiA-CoA transferase-like 13 260 IPR037171 -
Lomi3g01874 267 Coils Coil 19 39 - -
Lomi3g01874 267 Pfam Glucosamine-6-phosphate isomerases-6-phosphogluconolactonase 19 249 IPR006148 GO:0005975(InterPro)
Lomi3g01874 267 Gene3D - 8 262 - -
Lomi3g01874 267 NCBIfam 6-phosphogluconolactonase 15 259 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi3g01874 K01057 6-phosphogluconolactonase [EC:3.1.1.31]
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Event-related genes

Select Gene_1 Gene_2 Event_name
117386 Lomi10g01538 Lomi3g01874
321361 Lomi3g01874 Lomi4g01624
328560 Lomi4g01624 Lomi3g01874
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3829322 Lomi Lomi3g01874 Lomi-Chr3:15960272 Lomi5g01307 Lomi-Chr5:22430117
3861511 Lomi Lomi10g01538 Lomi-Chr10:12998031 Lomi3g01874 Lomi-Chr3:15960272
3891341 Lomi Lomi3g01874 Lomi-Chr3:15960272 Lomi4g01624 Lomi-Chr4:24310933