AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lomi3g01875 | ATGCCAACTTTAACGAAGTTATACTCGATGCAAGAAGCGTTAGAGCACAATTCAGCCGGAGATTGTTGGATTGTTGTTGACGGCAAGGTTTATGATGTATCATCGTATACGGAAGAACACCCCGGTGGAGATGATGTACTCCTCGAGTTTACTGGGAAAGACGCCACAGATGAATTTGAAGATGCAGGCCATAGCAAAACCGCCAGAGAACTTATGGGGAGTTTTTGTGTTGGGCTGCTGGACACATTGGACATCCCTCAACTTGAGGTAGTCTCGGAGGAACAAAAAAGTTACATTCCCGAAAATCTTGTTGACTTCAGTAAGCAATATTGGGTGGTTCCGGTGGCAGCTGTCAGCATATCGGTGGTTGTCACCTTCTTGTACTTATGCAAGAAGTAA | 399 | 45.11 | MPTLTKLYSMQEALEHNSAGDCWIVVDGKVYDVSSYTEEHPGGDDVLLEFTGKDATDEFEDAGHSKTARELMGSFCVGLLDTLDIPQLEVVSEEQKSYIPENLVDFSKQYWVVPVAAVSISVVVTFLYLCKK | 132 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lomi3g01875 | 132 | ProSiteProfiles | Cytochrome b5 family, heme-binding domain profile. | 5 | 81 | IPR001199 | - | |
| Lomi3g01875 | 132 | Pfam | Cytochrome b5-like Heme-Steroid binding domain | 10 | 80 | IPR001199 | - | |
| Lomi3g01875 | 132 | PRINTS | Cytochrome B5 signature | 68 | 80 | IPR001199 | - | |
| Lomi3g01875 | 132 | PRINTS | Cytochrome B5 signature | 30 | 40 | IPR001199 | - | |
| Lomi3g01875 | 132 | PRINTS | Cytochrome B5 signature | 55 | 62 | IPR001199 | - | |
| Lomi3g01875 | 132 | PRINTS | Cytochrome B5 signature | 40 | 54 | IPR001199 | - | |
| Lomi3g01875 | 132 | FunFam | Cytochrome b5 type B | 3 | 85 | - | - | |
| Lomi3g01875 | 132 | SUPERFAMILY | Cytochrome b5-like heme-steroid binding domain | 4 | 88 | IPR036400 | - | |
| Lomi3g01875 | 132 | SMART | Cyt-b5-2 | 8 | 81 | IPR001199 | - | |
| Lomi3g01875 | 132 | PANTHER | CYTOCHROME B5 | 4 | 119 | IPR050668 | GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER) | |
| Lomi3g01875 | 132 | Gene3D | - | 3 | 85 | IPR036400 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lomi3g01875 | K23490 | cytochrome b5 |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 321360 | Lomi3g01875 | Lomi4g01623 | |
| 328561 | Lomi4g01623 | Lomi3g01875 |
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| 3829323 | Lomi | Lomi3g01875 | Lomi-Chr3:15972073 | Lomi5g01306 | Lomi-Chr5:22426495 | |
| 3891342 | Lomi | Lomi3g01875 | Lomi-Chr3:15972073 | Lomi4g01623 | Lomi-Chr4:24299903 |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Lomi1g00939 | . | 2 | 120 | NADPH P450 reductases gene family | AT1G60660 | 59.664 | 2.36e-48 | 149.0 | |
| Lomi1g01171 | LST | 7 | 133 | NADPH P450 reductases gene family | AT2G32720 | 74.803 | 9.45e-73 | 211.0 | |
| Lomi1g01261 | LST | 30 | 281 | NADPH P450 reductases gene family | AT5G17770 | 81.746 | 5.07e-161 | 447.0 | |
| Lomi1g02107 | ACH,LST | 1 | 134 | NADPH P450 reductases gene family | AT5G53560 | 53.901 | 2.46e-50 | 155.0 | |
| Lomi2g02229 | ACH,LST | 1 | 134 | NADPH P450 reductases gene family | AT5G53560 | 55.556 | 2.00e-48 | 151.0 | |
| Lomi2g03082 | LST | 30 | 281 | NADPH P450 reductases gene family | AT5G17770 | 81.746 | 1.41e-161 | 448.0 | |
| Lomi2g03225 | LST | 7 | 133 | NADPH P450 reductases gene family | AT2G32720 | 74.803 | 9.25e-73 | 211.0 | |
| Lomi3g00184 | LST | 39 | 281 | NADPH P450 reductases gene family | AT5G17770 | 41.762 | 8.31e-65 | 204.0 | |
| Lomi3g01585 | ACH,LST | 1 | 132 | NADPH P450 reductases gene family | AT5G48810 | 50.758 | 5.33e-47 | 147.0 | |
| Lomi3g01875 | LST | 1 | 134 | NADPH P450 reductases gene family | AT1G26340 | 59.701 | 5.86e-55 | 166.0 | |
| Lomi4g01623 | LST | 1 | 134 | NADPH P450 reductases gene family | AT1G26340 | 64.925 | 1.15e-61 | 184.0 | |
| Lomi4g01894 | ACH,LST | 1 | 132 | NADPH P450 reductases gene family | AT5G48810 | 48.485 | 1.25e-45 | 144.0 | |
| Lomi4g03037 | LST | 39 | 281 | NADPH P450 reductases gene family | AT5G17770 | 41.379 | 1.19e-63 | 201.0 | |
| Lomi5g01052 | . | 47 | 120 | NADPH P450 reductases gene family | AT1G60660 | 79.73 | 7.35e-44 | 136.0 | |
| Lomi5g01306 | ACH,LST | 1 | 133 | NADPH P450 reductases gene family | AT5G53560 | 72.18 | 6.85e-72 | 209.0 | |
| Lomi9g01075 | . | 38 | 273 | NADPH P450 reductases gene family | AT5G17770 | 38.76 | 1.76e-49 | 174.0 | |
| Lomi9g02034 | ACH,LST | 1 | 131 | NADPH P450 reductases gene family | AT5G53560 | 58.333 | 2.01e-56 | 171.0 | |
| Lomi11g01084 | ACH,LST | 1 | 133 | NADPH P450 reductases gene family | AT5G53560 | 71.429 | 1.34e-70 | 206.0 | |
| Lomi12g00314 | ACH,LST | 1 | 131 | NADPH P450 reductases gene family | AT5G53560 | 56.818 | 1.21e-54 | 166.0 | |
| Lomi12g01167 | . | 38 | 273 | NADPH P450 reductases gene family | AT5G17770 | 38.76 | 8.95e-50 | 175.0 | |
| Lomi13g00028 | LST | 30 | 281 | NADPH P450 reductases gene family | AT5G17770 | 74.206 | 1.25e-140 | 395.0 | |
| Lomi13g01228 | LST | 6 | 83 | NADPH P450 reductases gene family | AT1G26340 | 38.462 | 1.83e-14 | 66.2 | |
| Lomi14g00082 | LST | 6 | 83 | NADPH P450 reductases gene family | AT1G26340 | 38.462 | 2.69e-14 | 65.9 | |
| Lomi14g01220 | LST | 30 | 281 | NADPH P450 reductases gene family | AT5G17770 | 74.206 | 3.38e-140 | 394.0 | |
| Lomi15g00173 | . | 2 | 120 | NADPH P450 reductases gene family | AT1G60660 | 57.983 | 8.75e-46 | 142.0 |