AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi6g01916 ATGGCGGCGGATCAGCTACATAAGCGTTCTAAAGTAAGCAGTGTCATCGACAGTTCTTCGGATATGCAGAAAGCAAAAAAGAAGAAATTTTCTCATGATTTAAATACCAGATCAAGTATTTCTCTCGAGTGGGATGGAAAGAAGGAACAAGTTGTTTCTAAGAAGGAGCAGATAAGCATTGCACGCAGAGAATTGACTCCATTTCTTCCTTCTATTTCAAATTACCCAAGGGTCCTGGGTGATGTCTTTGCAGCTCCTCCTGAATTGTTTGAACTGGTAAACTTGACAGGTTTGCTATCGTATGAGGTTTGGGAAACTCATTTGTCTCTTCAAGAAAGAGAGTTTTTGACCCAGTTTCTTCCTGAAGGCTCTGACCCGCATAAAGCTGTTTTTGAGTTGTTAGCTGGGAATAATTTATGCTTCGGAAATTCATTTTCGAAATGGGGTGCTTCAGTTTGTTCAGGTGGGTGTCACCCTGATGCCGTTCTCCGTCAAGAACAGCATAACAAGGCTAACAAAATATCATATTATTCAGAACTGCATGATTACCATACTACAATGATAGGGACTCTGCAATTGTGGAAGGAAAGATGGGCAAGCTGTGTGGATCCAGAAAATGATTTTATGCAAAAGATACTAAGTTCCAGAGAGGTTTTTAATAAAAGGGGGTCTTTACATGAGAACGGGATACAATATAGTCCAGAAGAAGGGGATGCGACATCTGGTTCTTGTTCATGGGATGCTGATGAAAAGTTATATAGTAGTGATAGCCCAAATTTAGCAATCACAAATGGAGAAACCTTAAAGAGGGTCTCCAGAGTGGATATGGGGAACAAATATTATGATTCCGCCGGTGGGAGATCGGTAGCAAGACCTAAAACAGGAGATAAGTTACGCCGGCTTAATGTAGAATGTGGCGACGGTGCCAAATATATGTCGTATATCAAGGTTAGCAAGGAACAGCATGAACGAGTTAAAAGCAGTATGAGACACTCTAACACCAGCATCCAGCCAAGGTCTCTTAATCACGTATTGGGCAATCTTGACGGCTTCTCTGTTCAGCCATATGAAGTGTTTGAGGAAGAAGAGCGACGGAAGCTGCATGACCACTGGTCGCATTTGGCAAAGAAAGATCTCCATATAGGCTTTGAGAATTGGAAAAGTTGGCGTTCGGCTAAGTGTCAAGTGACAAAATCTTTAATGAAAGAACTGGAAGACAAATGGAAGTTAAATGATCAGCGAGATTCAAATTTGAACAATCGGTACGAGGAGGTTTCGGGGTTTATCTGTTTGGAACAAAATGATGATTCAATATTTGGGTCAGAGGAGGATCTTAATGCAGAAAATCACGAAACCAGCATGCAGATTGAACATAGAAAAGAGTCTAGTCAAGATACTGCTCAGAATCAGCATCTGATACATAATGATAAGCAAAACTTCTGCCCCATGGCCATGGATGCTAATACTGAAGTATTGACAGAATCGAATGCTTTTCCTTCTAGTATAGTTGAATATACCGAAAATACAAGTCATGTAGACACTCCTGTTGATGAACAGCAGTTTCCTCTTCCATCTGCTGCCAGTGAACTATGGCCGCCAGTTAGCCTACCACCAAGTGTGTACTATAATCAACCTACATCTGTAAGTCATGAGTACGCTTCTATCAGTGAATTGTCAATTAGGCAAGCCCAATCAAGTTTTCTGCATAGACGATCTGACGGTGGAGATTCTTTCTATAATCCATTCGCCAATCAAGATCGTAACGAACTACTACTGAATCCATTTTTGAAAGATCCCGTGAGTGCTCCTTATCTTCATGAACAGAAGCTCTCTAGGCTCGCTTTTCACCCACCCGGAAGTGATGCGTTGCTGGGAACCGGTCAATTTCCAAGAAATTTATGCTCATCATTGCCATTGGTTCCAAGTAATCATAGCATTGAAGAAAACATATTTGCAGATGGAGGTGGTAGGTTCTCAATTCCAAGGCAAGAACACTTGTTGCCAGTCAATCATGTTCAGGATTGGCCTATAAATGGTGTTAATCTGCCAATGCCAGCATCATCATCATCCCATCATCAATTAAGTCAAAATTGGTTTTCAAATGATGAGATGGTGCATGATGGGTGGTCAGGCGGTGTAGCACCCCACCAGGACATTGTGAATATTGGTCAGGTGGCTGATGAGAGCTTATATGGTGTTTTATCTCAGTGTAATAGGCTGCGTTCAGGGGCTCATTTTGGTTCAACTAGTGCAATGGAACAGTTTGTTCAGCCTGGGAACTATGGGATGGGGCGTGGACCGGTTTCGCCTATGACCACCAATGTTGTGCCGCCTGGTCCCACTAGAGGGTTGGGTCTAAACTACATGAGTGGCAATGAAGCTCAATTAGGATGGATGAACTTGCCCCGTGCGTTGCAGGAGACTGGGGTGAAATCATTTCCCAGTTTATGGAATGATAAAGATTTAGGACGATAG 2475 42.38 MAADQLHKRSKVSSVIDSSSDMQKAKKKKFSHDLNTRSSISLEWDGKKEQVVSKKEQISIARRELTPFLPSISNYPRVLGDVFAAPPELFELVNLTGLLSYEVWETHLSLQEREFLTQFLPEGSDPHKAVFELLAGNNLCFGNSFSKWGASVCSGGCHPDAVLRQEQHNKANKISYYSELHDYHTTMIGTLQLWKERWASCVDPENDFMQKILSSREVFNKRGSLHENGIQYSPEEGDATSGSCSWDADEKLYSSDSPNLAITNGETLKRVSRVDMGNKYYDSAGGRSVARPKTGDKLRRLNVECGDGAKYMSYIKVSKEQHERVKSSMRHSNTSIQPRSLNHVLGNLDGFSVQPYEVFEEEERRKLHDHWSHLAKKDLHIGFENWKSWRSAKCQVTKSLMKELEDKWKLNDQRDSNLNNRYEEVSGFICLEQNDDSIFGSEEDLNAENHETSMQIEHRKESSQDTAQNQHLIHNDKQNFCPMAMDANTEVLTESNAFPSSIVEYTENTSHVDTPVDEQQFPLPSAASELWPPVSLPPSVYYNQPTSVSHEYASISELSIRQAQSSFLHRRSDGGDSFYNPFANQDRNELLLNPFLKDPVSAPYLHEQKLSRLAFHPPGSDALLGTGQFPRNLCSSLPLVPSNHSIEENIFADGGGRFSIPRQEHLLPVNHVQDWPINGVNLPMPASSSSHHQLSQNWFSNDEMVHDGWSGGVAPHQDIVNIGQVADESLYGVLSQCNRLRSGAHFGSTSAMEQFVQPGNYGMGRGPVSPMTTNVVPPGPTRGLGLNYMSGNEAQLGWMNLPRALQETGVKSFPSLWNDKDLGR 824
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi6g01916 824 CDD DEUBAD-NFRKB 88 194 - -
Lomi6g01916 824 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 86 197 IPR044867 -
Lomi6g01916 824 PANTHER NFRKB-RELATED 1 802 IPR024867 GO:0031011(InterPro)
Lomi6g01916 824 MobiDBLite consensus disorder prediction 1 32 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi6g01916 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
326396 Lomi7g01690 Lomi6g01916
330774 Lomi6g01916 Lomi7g01690
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr6:27057656 Lomi7g01690 Lomi-Chr7:27230142 wgd