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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi6g01918 ATGTTGCGAGCCGGAAGCAGGAGATTAGCAGCGTCTCTCGCATCTCCGTTTAGGCACACAAACTCTGCGTCATCTGTATCTATCATCTCTAAAAATACCCAGATCGATGACGTTACCGCCCCCCCAAAGGATCCCCGATCTAACCACGGTTCATCCCTCTTTTCCCATCATTTTCATCTCATGTCCCGAGGATTTGCTTCCAGCTCAATAACCCCAACCTTTGAGGACAAAATTCCACCGACAGTAGCAGCCATCACCAACCCTACTTCTAAGATAGTATACGATGAGCATAATCATGAGCGTTACCCACCTGGTGATCCAAGCAAACGGGCATTTGCATATTTTGTCTTGACTGGTGGCAGGTTTGTGTACGCTTCCTTGATTCGGCTTCTGGTGCTCAAATTTGTCCTCAGTATGTCTGCCAGTAAAGATGTTCTTGCACTTGCCTCTCTTGAGGTTGATCTTTCTAGCATCGAACCCGGGACCACCGTGACAGTTAAGTGGCGTGGAAAGCCTGTGTTCATCAGGCGCCGGACAGATGATGATGTGAAGCTGGCCAACAGTGTTGATATCTCAACTCTTCGTGACCCACAAGAGGATGCTGCTAGGGTCAAGAACCCTGAATGGCTTGTTGTGGTTGGTGTGTGTACCCATCTGGGTTGCATCCCATTACCAAATGCTGGTGATTTTGGTGGCTGGTTTTGTCCATGTCATGGTTCTCATTATGACATCTCTGGCAGGATCCGTAAGGGTCCAGCACCCTATAATTTGGAGGTGCCGACTTACAGCTTCTTGGAGGACAACAAGTTGCTCGTTGGATGA 822 48.66 MLRAGSRRLAASLASPFRHTNSASSVSIISKNTQIDDVTAPPKDPRSNHGSSLFSHHFHLMSRGFASSSITPTFEDKIPPTVAAITNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTDDDVKLANSVDISTLRDPQEDAARVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEDNKLLVG 273
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi6g01918 273 SUPERFAMILY ISP domain 135 272 IPR036922 GO:0051537(InterPro)
Lomi6g01918 273 PRINTS Rieske 2Fe-2S subunit signature 245 257 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Lomi6g01918 273 PRINTS Rieske 2Fe-2S subunit signature 211 222 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Lomi6g01918 273 PRINTS Rieske 2Fe-2S subunit signature 233 245 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Lomi6g01918 273 Pfam Ubiquinol cytochrome reductase transmembrane region 105 144 IPR004192 GO:0008121(InterPro)
Lomi6g01918 273 Pfam Rieske [2Fe-2S] domain 203 258 IPR017941 GO:0051537(InterPro)
Lomi6g01918 273 SUPERFAMILY ISP transmembrane anchor 90 146 - -
Lomi6g01918 273 CDD Rieske-cytochrome-bc1 150 273 - -
Lomi6g01918 273 FunFam Cytochrome b-c1 complex subunit Rieske, mitochondrial 143 273 - -
Lomi6g01918 273 NCBIfam ubiquinol-cytochrome c reductase iron-sulfur subunit 129 273 IPR006317 GO:0008121(InterPro)
Lomi6g01918 273 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 183 271 IPR017941 GO:0051537(InterPro)
Lomi6g01918 273 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 78 273 IPR014349 GO:0005750(PANTHER)|GO:0006122(PANTHER)|GO:0016491(PANTHER)|GO:0051537(InterPro)
Lomi6g01918 273 Gene3D - 142 273 IPR036922 GO:0051537(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi6g01918 K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
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Event-related genes

Select Gene_1 Gene_2 Event_name
326398 Lomi7g01692 Lomi6g01918
330776 Lomi6g01918 Lomi7g01692
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr6:27076088 Lomi6g02169 Lomi-Chr6:30009824 dispersed
Lomi Lomi-Chr6:27076088 Lomi6g02168 Lomi-Chr6:30009824 wgd
Lomi Lomi-Chr6:27076088 Lomi7g01692 Lomi-Chr7:27246319 wgd
Lomi Lomi-Chr6:27076088 Lomi7g01916 Lomi-Chr7:29882368 wgd