AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi6g01921 ATGGAAGATACCTTCAAAGTTCGAGTTGACAAAACTTTCGGATCTCTAGAATCTTTTTCATCTTCATCTTCCACAATCAAATCACAACAATCGTCATCTTTGAACTCTTTGTGGTGTCTTACAGACGAAGAAATCGAAAGAAATAAATGGATACAAGATAAAATCGAACAACCTCACGACGATATCGATGAGCAAATTCACCGTCTTAAAAATCCTAAACCCTATTCCCCCTTTCTTCAAGGCCTTCTTGCTCAACCCTCAACTTCCGATCAAAACCTAGAATCTGACATTCAAGAGCTTGATGAAGATGATGATGAAGATGATAATGATGGTGAAAACCGGAAACCGGAACTGACTAAACCGGATGATCATGATAATGAAGAATGGAATATTCGAACTTCAGTTGGCATGGATTGCACTCTCGATAACGAGGAAGAGGAAGATGCTTATGACAAGGTGGCTGTAGGCAAGGGAGAGTCTGTAGATCGTTTTTACTTGAAAAGTGTTAATGATTATGAAGTTGATATGGATTCCATCAATGAGCGTCCCAACTCATTCTCTGATGTGATTAGGGATCCACGTGCAAATCACATGGCTGCAAAACTCAGGCTTAAAGAAGACGATGAATCTGCTAGAAAGTTAGGTCTGCAGGTTTCTAAGAATAATGTTCAGAAGTCAACTCAAACTTCTATAGAATTGAAGGAACAGTTAGTGACTAATGAACCTCAAGGAATGAAAGTAGTACCCTTTTTCCCTCAAAGTTCGTCTAGTCTTCCGGATCATGTACGCAATCCTTCAAAGTACACACATTACACCTTTGATTCAAAGGACGATGTGGATGAAGAAACAAATCAAAAAGCTTATATGGACTTCTTTAATTCGATGAAGGGGTCTGATACGATGGACACACAAGATGTATCAACTGATTCTTTAAAATCAATTACATTCACTCCGAAAAAGAAGTCAGGTGATGTCACAATGAAGAACAGTAAGGTAGATGGATATGAAGACAAGAAAGTTGTTCCCATTAGTATTGCTGATAGTGAGGAGGTATGCATGATGGATGAAGACGAGCCTGAAATCTCCACAAATAAAGGTAGCGGCTTGCAGAAAGGTGGTCGCAAGTATCGAACAAAGGGTGGTATCCATGATGAATAA 1158 39.12 MEDTFKVRVDKTFGSLESFSSSSSTIKSQQSSSLNSLWCLTDEEIERNKWIQDKIEQPHDDIDEQIHRLKNPKPYSPFLQGLLAQPSTSDQNLESDIQELDEDDDEDDNDGENRKPELTKPDDHDNEEWNIRTSVGMDCTLDNEEEEDAYDKVAVGKGESVDRFYLKSVNDYEVDMDSINERPNSFSDVIRDPRANHMAAKLRLKEDDESARKLGLQVSKNNVQKSTQTSIELKEQLVTNEPQGMKVVPFFPQSSSSLPDHVRNPSKYTHYTFDSKDDVDEETNQKAYMDFFNSMKGSDTMDTQDVSTDSLKSITFTPKKKSGDVTMKNSKVDGYEDKKVVPISIADSEEVCMMDEDEPEISTNKGSGLQKGGRKYRTKGGIHDE 385
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi6g01921 385 MobiDBLite consensus disorder prediction 95 111 - -
Lomi6g01921 385 MobiDBLite consensus disorder prediction 112 131 - -
Lomi6g01921 385 MobiDBLite consensus disorder prediction 68 134 - -
Lomi6g01921 385 Pfam Tumour suppressing sub-chromosomal transferable candidate 4 249 310 IPR029338 -
Lomi6g01921 385 PANTHER TUMOR SUPPRESSING SUBTRANSFERABLE CANDIDATE 4 TSSC4 1 381 IPR029338 -
Lomi6g01921 385 MobiDBLite consensus disorder prediction 354 385 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi6g01921 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr10:31593784 Lomi6g01921 Lomi-Chr6:27125869 dispersed
Lomi Lomi-Chr6:27125869 Lomi8g02355 Lomi-Chr8:33072322 wgd