AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi6g01924 ATGGCAGCACCTACATATTTATCAGGAGCTAAAACAATGTATCATTTCTCCAAATTAGATTTAAATTCACACTCATCATCCTCACATTATCGTCACCTCCGTTTCGCTTCGTGGGTTGCATCGTTTAATGGATCATGTAGAGCGAATAGTGGTCCGGTTTCGGGTAAAGGGAAAGGGTTGAAGGTTGTTTGTAATGTGCAAAAAGTAGATGTTCTTACGAGAGGTGAACCCGAAACTCGAGGTTTAGAAGGGTTAAGTAAACAGTTATCGTGTGTGATGAAGTTTGGTGGGTCGTCTGTTGCGTCTGCTGAAAGGATGAAAGAAGTGGCTGATCTTATTCTTAGTTTTCCGGAAGAGAGTCCTGTTATTGTTCTATCTGCCATGGGCAAGACCACTAACAAGCTTCTAGTGGCTGGAGAGAAGGCTTCAAATTGTGTCTCGGTTGTTTCTGAAATTGATGAATTGAGCTTTGTGAAAGAACTTCATTATAGGACAGTGGAAGAGCTTGGATTAGAGAGAACCCTTGTTACAGACCACTTAGAAAAGTTAGAGCGACTTTTGAATGGGATTTCTGTTCTGAAAGAATTCACACCACGTGCAAGAGACTACCTAGTCTCATTTGGAGAGTGCATGTCCACAAGAATTTTTGCAGCATACTTGAATAAAATCGGTGTCAAAGCGCGCCAATATGATGCATTTGAGATTGGTTTCATAACGACAGATGATTTTACTAATGCGGATATATTGGAAGCAACTTATCCAGCTGTAGCAAAGAGACTAAATGGTGACTGGAAGAGTGATCCTGCGATTCCTATTGTCACTGGCTTTCTCGGAAAGGGCTGGAGAACTTGTGCTGTGACTACATTGGGCAGAGGTGGTAGTGATTTGACTGCCACCACCATTGGTAAAGCACTTGGGTTGAGGGAAATTCAGGTATGGAAAGATGTTGATGGTGTATTGACATGTGACCCTAATATATACTCGGGTGCAGAACCTGTGCCATATTTGACCTTCGATGAGGCTGCTGAGCTTGCATATTTTGGTGCCCAGGTTCTACATCCACAGTCTATGAGGCCCGCTAGAGAGGGTGATATACCTGTTAGGGTTAAGAATTCTTATAACCCTAATGCTCCAGGTACCCTCATCACTAAATCAAGAGATATGAGTAAGGCAGTACTAACCAGCATTGTTTTAAAACGCAATGTAACCATGTTGGACATTGTTAGTACTAGGATGCTTGGTCAATTTGGTTTTCTCGCTAAGGTGTTTTCAATATTTGAGGATTTGGGTATATCTGTGGATGTTGTAGCTACGAGTGAAGTTAGCATTTCATTAACTTTAGATCCTTCAAAACTTTGGAGCAGAGAGTTGATTCAGCAGGCAAGCGAACTAGATCATGTTGTTGAAGAACTAGAAAAAATCGCCAAAGTGAATCTTCTCCAGCACAGATCGATTATTTCACTCATTGGAAATGTTCAGAGATCCTCACTTGTATTGGAGAAGGCGTTTCGTGTTCTTCGAGTGAATGGAGTGAATGTTCAAATGATATCCCAAGGAGCATCAAAGGTGAATATATCACTTATAGTAAATGACAGTGAATCAGAAAAATGCGTGAAAGCTCTGCATTCGGCATTCTTTGAGAGTGATATGTCGGATCTTGACTAA 1665 41.32 MAAPTYLSGAKTMYHFSKLDLNSHSSSSHYRHLRFASWVASFNGSCRANSGPVSGKGKGLKVVCNVQKVDVLTRGEPETRGLEGLSKQLSCVMKFGGSSVASAERMKEVADLILSFPEESPVIVLSAMGKTTNKLLVAGEKASNCVSVVSEIDELSFVKELHYRTVEELGLERTLVTDHLEKLERLLNGISVLKEFTPRARDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFEIGFITTDDFTNADILEATYPAVAKRLNGDWKSDPAIPIVTGFLGKGWRTCAVTTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPNIYSGAEPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLITKSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQFGFLAKVFSIFEDLGISVDVVATSEVSISLTLDPSKLWSRELIQQASELDHVVEELEKIAKVNLLQHRSIISLIGNVQRSSLVLEKAFRVLRVNGVNVQMISQGASKVNISLIVNDSESEKCVKALHSAFFESDMSDLD 554
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi6g01924 554 FunFam Aspartokinase 129 224 - -
Lomi6g01924 554 FunFam Aspartokinase 200 382 - -
Lomi6g01924 554 SUPERFAMILY Carbamate kinase-like 92 385 IPR036393 -
Lomi6g01924 554 PANTHER ASPARTATE KINASE 88 547 - GO:0004072(PANTHER)|GO:0005829(PANTHER)|GO:0009089(PANTHER)|GO:0009090(PANTHER)|GO:0009570(PANTHER)
Lomi6g01924 554 FunFam Aspartokinase 1 477 546 - -
Lomi6g01924 554 Pfam ACT domain 486 545 IPR054352 -
Lomi6g01924 554 ProSitePatterns Aspartokinase signature. 92 100 IPR018042 GO:0004072(InterPro)|GO:0008652(InterPro)
Lomi6g01924 554 SUPERFAMILY ACT-like 391 491 IPR045865 -
Lomi6g01924 554 CDD AAK-AK-LysC-like 91 383 IPR041746 -
Lomi6g01924 554 Pfam Amino acid kinase family 91 371 IPR001048 -
Lomi6g01924 554 Coils Coil 454 474 - -
Lomi6g01924 554 Gene3D Aspartokinase, catalytic domain 129 224 IPR042199 -
Lomi6g01924 554 SUPERFAMILY ACT-like 474 549 IPR045865 -
Lomi6g01924 554 Gene3D - 403 480 - -
Lomi6g01924 554 NCBIfam aspartate kinase 92 547 IPR001341 GO:0004072(InterPro)|GO:0008652(InterPro)
Lomi6g01924 554 Gene3D - 394 546 - -
Lomi6g01924 554 ProSiteProfiles ACT domain profile. 407 487 IPR002912 -
Lomi6g01924 554 Gene3D - 92 382 IPR036393 -
Lomi6g01924 554 FunFam Aspartokinase 403 476 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi6g01924 K00928 aspartate kinase [EC:2.7.2.4]
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Event-related genes

Select Gene_1 Gene_2 Event_name
117064 Lomi10g00777 Lomi6g01924
124480 Lomi6g01924 Lomi8g00854
326401 Lomi7g01695 Lomi6g01924
330779 Lomi6g01924 Lomi7g01695
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr6:27145565 Lomi9g00551 Lomi-Chr9:7268633 dispersed
Lomi Lomi-Chr10:7050928 Lomi6g01924 Lomi-Chr6:27145565 wgd
Lomi Lomi-Chr6:27145565 Lomi7g01695 Lomi-Chr7:27294707 wgd
Lomi Lomi-Chr6:27145565 Lomi8g00854 Lomi-Chr8:6966433 wgd