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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi6g01932 ATGATGAATTCTATTCTTTCTCTAGTAACAATACTTTTCGTCGTCTCATCATCGGCTATCGCCGGATCCGATTCTCCGTTCATCGTAGCTCACAAGAAAGCTACACTTAACAGACTCAAATCCGGCGCTGAAAAAGTCTCCGTTTCAATCGATATTTATAATCAAGGATCTTCGACTGCATATGATGTTAGTCTTACTGATGATGGCTGGTCTTCTGAGCTATTCAAAATTATCTCAGGAAATACTTCAACCTCTTGGGAAAGGCTTGACGTCGGTGCTCAAGTATCACACTCCTTTGAGTTGGAGTCGACTGTGAAAACTGTATTCTACAGCAAACCAGCTGTTGTTACATTCCGTGTCCCCACAAAGGCTGCACTACAGGAGGCATTTACGACTGCACTTCTACCTCTGGAAATCCTATCAGACAAGCCTCAAGAGAGTGCACTTAATGTTGCTAAGAAGTTGTTGGCTAAGTATGGCTCCTTGGTATCGGTAATCTCCATTGTGGTTTTATTTGTGTACCTGGTGGCAACTCCATCCAAGTCTGGTGCTGCAAAGGGGAGCAAGAAGAAACGTTGA 579 43.52 MMNSILSLVTILFVVSSSAIAGSDSPFIVAHKKATLNRLKSGAEKVSVSIDIYNQGSSTAYDVSLTDDGWSSELFKIISGNTSTSWERLDVGAQVSHSFELESTVKTVFYSKPAVVTFRVPTKAALQEAFTTALLPLEILSDKPQESALNVAKKLLAKYGSLVSVISIVVLFVYLVATPSKSGAAKGSKKKR 192
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi6g01932 192 PANTHER TRANSLOCON-ASSOCIATED PROTEIN, BETA SUBUNIT PRECURSOR TRAP-BETA SIGNAL SEQUENCE RECEPTOR BETA SUBUNIT 4 191 - GO:0005783(PANTHER)
Lomi6g01932 192 Pfam Translocon-associated protein beta (TRAPB) 12 188 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi6g01932 K13250 translocon-associated protein subunit beta
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Event-related genes

Select Gene_1 Gene_2 Event_name
326407 Lomi7g01701 Lomi6g01932
330785 Lomi6g01932 Lomi7g01701
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr6:27208462 Lomi7g01701 Lomi-Chr7:27366047 dispersed
Lomi Lomi-Chr6:27204717 Lomi6g01932 Lomi-Chr6:27208462 tandem