AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi7g01689 ATGGATAGTGATAACAAACACAAAAAGGAAGTGATTCGATTGGAACGTGAAGCCGTAATTCCAATTTTGAAACCTAGACTCATCATGACTTTGGCTAATCTAATCGAACAAAGTGCTGATCGGGCAGAGTTCTTGAAGCTCTGTAAGAGAGTTGAGTACATGATTCGAGCATGGTATTTTCTTCAGTTTGAAGATCTTATGCAACTATATGCACTCTTTGATCCTGTCTACGGGGCTCAGAAATTGCAGCAGCAGAACTTATCCACAGAAGAGATTGACAATCTTGAACAGAATTTCCTGACATATATGTTCAAGGTACTGGAAAAAAGTAACTTTAAGATTGCTACCAATGAGGAGATTGCGGTTGCACAATCAGGACAGTATCTTTTGAACCTTCCCATCTCAGTGGATGAATCAAAGCTTGATAAGAACTTATTGAAGAGGTACTTTAAGGAGCATCCTCAAGAAAACCTTCCTGACTTTTCAGATAAGTATGTAATCTTTCGACGTGGCATTGGAATTGATCGGACGACTGATTACTTTATCATGGAAAAGGTGGACATAATCATTGCACGTATATGGGCATGGATCATGAGAGTAACTAAGCTAGAAAAGTTTTTCCCTAAAAAATCAAATGTGTTACTTGAAAAATATATGAATAAAGATTTGAAGAAGGATGATGAAATCACGTACAAAGAACTTCCGGATGACTTGTATGTTGAGCGGATCCGGATAGAGAATTTAGATTTCAGTTTACAGAACTTAACGAGTAAGATTACAATCCAAGAACCTACATTCGACAGGATAATTGTCGTCTACAGGCTAGCAAGTACTAAGACGAAAAAGGAACGAGGAATATACGTCAAACATTTAAAACAGATCCCAATGGCAGATATGGAAATAGTCCTGCCAGAGAAGAAAAATCCAAGTTTAACCCCTATGGATTGGGTGAAATTTCTTACTACGGCTGTACTCGGACTGGGAGCTGCCACTGGTTCATTTGAGACACCTCAAGCTGACTTTTGGGTCATTGTTGCTGTTGTCTCTACAATAGTTGGTTATTGCGCCAAAATATACTTTACGTTTCAGGCAAATATGGAAACATATCAGAACTTAATTACACAATTCATGTATGACAAACAACTGGATAGTGGAAAAGGCACCCTTCTTCATTTATGTGATGATGTGATTCAACAAGAAGTAAAAGAGGTGATCATTTCTTTCTTTATATTAATGGAACAGGGTAAAGCAACTTTAAAGGAACTCGACCAGAAATGTGAGGAACTACTAAAGGAAGAGTTTGGTGAGAGATGCAACTTTGATGTAGATGATGCAGTTAATAAATTAGAAAAGCTGGGCATTATTTCTAAGGATCCAATAGGAAGGTATTACTGTGCTGGTCTTAAACGTGCAAATGAGATCATTGGCACCACCACAGAAGAGCTGGTTCTAAAGGCAAGGCAGGAGGGCGGTCCTTAA 1479 38.34 MDSDNKHKKEVIRLEREAVIPILKPRLIMTLANLIEQSADRAEFLKLCKRVEYMIRAWYFLQFEDLMQLYALFDPVYGAQKLQQQNLSTEEIDNLEQNFLTYMFKVLEKSNFKIATNEEIAVAQSGQYLLNLPISVDESKLDKNLLKRYFKEHPQENLPDFSDKYVIFRRGIGIDRTTDYFIMEKVDIIIARIWAWIMRVTKLEKFFPKKSNVLLEKYMNKDLKKDDEITYKELPDDLYVERIRIENLDFSLQNLTSKITIQEPTFDRIIVVYRLASTKTKKERGIYVKHLKQIPMADMEIVLPEKKNPSLTPMDWVKFLTTAVLGLGAATGSFETPQADFWVIVAVVSTIVGYCAKIYFTFQANMETYQNLITQFMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISFFILMEQGKATLKELDQKCEELLKEEFGERCNFDVDDAVNKLEKLGIISKDPIGRYYCAGLKRANEIIGTTTEELVLKARQEGGP 492
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi7g01689 492 Pfam Protein of unknown function (DUF3754) 266 387 IPR022227 -
Lomi7g01689 492 PANTHER AMINOPEPTIDASE (DUF3754) 3 489 - -
Lomi7g01689 492 Coils Coil 412 432 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi7g01689 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
117062 Lomi10g00774 Lomi7g01689
124673 Lomi7g01689 Lomi8g00852
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr10:7035551 Lomi7g01689 Lomi-Chr7:27224946 wgd
Lomi Lomi-Chr7:27224946 Lomi8g00852 Lomi-Chr8:6950372 wgd