AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lomi7g01695 | ATGGCAACACTTACGTATTTATCAGGAGCTGCTAAAACACCTTATCATATCTGCAAATTAGATTTAAATTCACACTCATTATCCTCACATTATCATCATCTACGGTTCGCTTCCTCCGTTGCGTCGTTTAATGGATCATGTAGAGCGAGTTATGGTCCGGGTAAGGGGAAAGGGGGTATGAACGTGGTTTGTAATGTGCAAAAATTAGATGTGCTTACGAGAAGTGAACCGGAAACTCGAGGTTTAGAAGGGTTAAGTAAACAGTTATCATGTGTGATGAAGTTTGGTGGATCGTCTGTTTCGTCTGCTGAACGGATGAAAGAAGTGGCTGATCTTATACTTAGTTTTCCGGAAGAGAGTCCGGTTATTGTCTTGTCTGCCATGGGCAAGACTACTAACAAGCTTTTAGTGGCTGGAGAGAAAGCTGCAAGTTGTGTTTCGGTCGTTTCTGAAATTGATGAATTGAGCTTTGTGAAAGAACTACATTACAGGACAACGGATGAGCTTGGATTAGAGAGAGCACTCGTGACAGACCACTTAGAAAAGTTAGAGCGACTTTTGAATGGGATTTCTGTACTAAAAGAATTCACACCACGTGCAAGAGACTACTTAGTCTCATTTGGGGAGTGCATGTCCACAAGAATTTTTGCAGCCTACTTGAATAAAATCGGTGTCAAAGCACGCCAATACGATGCATTCGATATCGGTTTCATAACAACGGATGACTTCACTAATGCGGATATTTTGGAAGCAACGTATCCAGCTGTAGCGAAGAGACTAAATGGTGATTGGAATAGTGATCCTGCAATTCCTATTGTCACTGGCTTTCTTGGAAAGGGTTGGAGAACCTGTGCTGTGACTACATTGGGTAGAGGTGGTAGTGATTTGACTGCCACCACCATTGGTAAAGCACTTGAGTTGAGGGAAATTCAGGTTTGGAAAGATGTTGATGGTGTTTTGACATGTGACCCTAATATATACTCGGGTGCAGAACCTGTGCCATACTTGACTTTTGACGAGGCAGCTGAACTTGCATATTTTGGTGCCCAGGTTCTACATCCACAGTCTATGAGGCCCGCCAGAGAGGGTGATATACCTGTTAGGGTTAAAAATTCTTATAACCCTAATGCTCCAGGTACCCTCATCACTAAATCAAGAGATATGAGTAAGGCAGTACTAACCAGCATTGTTTTGAAACGCAATGTAACCATGTTGGACATTGTTAGTACTAGGATGCTTGGTCAATTTGGATTTCTCGCTAAGGTGTTTTCGACATTTGAGGATTTGGGTATATCTGTGGATGTTGTAGCTACCAGTGAAGTTAGCATTTCGTTAACTTTAGATCCTTCAAAGCTTTGGAGCAGGGAGTTGATTCAGCAGGAACTTGATCATGTTGTTGAAGAACTTGAAAAAATCGCTAAAGTGAATCTTCTTCAGCACAGATCGATTATTTCACTCATTGGAAATGTTCAGAGGTCCTCACTTGTATTGGAGAAGGCGTTTCGTGTTCTTCGAGTGAATGGAGTGAATGTTCAAATGATATCCCAAGGAGCATCAAAGGTGAATATATCACTTATAGTAAATGACAGTGAATCAGAGAAATGTGTGAAAGCTCTGCATTCGGCATTCTTTGAGAGTGATATGTCGGATCTTGACTAA | 1659 | 41.53 | MATLTYLSGAAKTPYHICKLDLNSHSLSSHYHHLRFASSVASFNGSCRASYGPGKGKGGMNVVCNVQKLDVLTRSEPETRGLEGLSKQLSCVMKFGGSSVSSAERMKEVADLILSFPEESPVIVLSAMGKTTNKLLVAGEKAASCVSVVSEIDELSFVKELHYRTTDELGLERALVTDHLEKLERLLNGISVLKEFTPRARDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLNGDWNSDPAIPIVTGFLGKGWRTCAVTTLGRGGSDLTATTIGKALELREIQVWKDVDGVLTCDPNIYSGAEPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLITKSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQFGFLAKVFSTFEDLGISVDVVATSEVSISLTLDPSKLWSRELIQQELDHVVEELEKIAKVNLLQHRSIISLIGNVQRSSLVLEKAFRVLRVNGVNVQMISQGASKVNISLIVNDSESEKCVKALHSAFFESDMSDLD | 552 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lomi7g01695 | 552 | ProSiteProfiles | ACT domain profile. | 407 | 480 | IPR002912 | - | |
| Lomi7g01695 | 552 | FunFam | Aspartokinase | 129 | 224 | - | - | |
| Lomi7g01695 | 552 | FunFam | Aspartokinase | 200 | 382 | - | - | |
| Lomi7g01695 | 552 | SUPERFAMILY | Carbamate kinase-like | 92 | 385 | IPR036393 | - | |
| Lomi7g01695 | 552 | SUPERFAMILY | ACT-like | 472 | 547 | IPR045865 | - | |
| Lomi7g01695 | 552 | Gene3D | - | 92 | 382 | IPR036393 | - | |
| Lomi7g01695 | 552 | ProSiteProfiles | ACT domain profile. | 485 | 552 | IPR002912 | - | |
| Lomi7g01695 | 552 | ProSitePatterns | Aspartokinase signature. | 92 | 100 | IPR018042 | GO:0004072(InterPro)|GO:0008652(InterPro) | |
| Lomi7g01695 | 552 | Gene3D | - | 403 | 478 | - | - | |
| Lomi7g01695 | 552 | SUPERFAMILY | ACT-like | 391 | 489 | IPR045865 | - | |
| Lomi7g01695 | 552 | CDD | AAK-AK-LysC-like | 91 | 383 | IPR041746 | - | |
| Lomi7g01695 | 552 | FunFam | Aspartokinase 1 | 475 | 544 | - | - | |
| Lomi7g01695 | 552 | NCBIfam | aspartate kinase | 92 | 545 | IPR001341 | GO:0004072(InterPro)|GO:0008652(InterPro) | |
| Lomi7g01695 | 552 | PANTHER | ASPARTATE KINASE | 88 | 545 | - | GO:0004072(PANTHER)|GO:0005829(PANTHER)|GO:0009089(PANTHER)|GO:0009090(PANTHER)|GO:0009570(PANTHER) | |
| Lomi7g01695 | 552 | FunFam | Aspartokinase | 403 | 474 | - | - | |
| Lomi7g01695 | 552 | Gene3D | Aspartokinase, catalytic domain | 129 | 224 | IPR042199 | - | |
| Lomi7g01695 | 552 | Gene3D | - | 394 | 544 | - | - | |
| Lomi7g01695 | 552 | Pfam | ACT domain | 407 | 450 | IPR054352 | - | |
| Lomi7g01695 | 552 | Pfam | ACT domain | 484 | 543 | IPR054352 | - | |
| Lomi7g01695 | 552 | Pfam | Amino acid kinase family | 91 | 371 | IPR001048 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lomi7g01695 | K00928 | aspartate kinase [EC:2.7.2.4] |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 117065 | Lomi10g00777 | Lomi7g01695 | |
| 124674 | Lomi7g01695 | Lomi8g00854 | |
| 326401 | Lomi7g01695 | Lomi6g01924 | |
| 330779 | Lomi6g01924 | Lomi7g01695 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lomi | Lomi-Chr7:27294707 | Lomi9g00551 | Lomi-Chr9:7268633 | dispersed | |
| Lomi | Lomi-Chr10:7050928 | Lomi7g01695 | Lomi-Chr7:27294707 | wgd | |
| Lomi | Lomi-Chr6:27145565 | Lomi7g01695 | Lomi-Chr7:27294707 | wgd | |
| Lomi | Lomi-Chr7:27294707 | Lomi8g00854 | Lomi-Chr8:6966433 | wgd |