AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi7g01699 ATGAAACCAAACAATCAACCAGGTCCTTCATCATCATCTGCTCCAGTTGGCAATTATTGGGGGACCCACGTCATGGGTACACCGGCGCCACAGTCATCTTCCAACTATCCTCCGCCCCAATACGGCGTCCCTCAGCCTCCACCTCCACCTCAGCCCAACAACATCGATAATGTTCGTAAAAAGCTTAATTCATGGGGCAATAAGGCCGAGACAGCCGCCACCAATATCTGGACTAATCTGAAAGCCGGTCGATCTGTGACCGAATCGGCATGGGGAAAAATGAATTTGACAGCAAAAGCGTTGACGGAAGGTGGTTTCGAATCGTTGTATAAGCAAAACTTTACGACGTACCCAAATGAGAAACTTAAAAGGACTTTTGCATGTCATCTGTCTACGTCCAGTGGACCTGTTGCTGGAACGTTGTATCTTTCGAATGTTCATGTTGCTTTTTGTAGTGATCGCCCATTGTCTTCTGTCCAACCCAATGGCATGGAGTCTTGGATCTACTACAAGGTTATAATCCCATTGGAGAAGATAGCAACGGTACAGCCGGTTACAATACCGGGAAAGAAACAAGTAGACAAGTACATCCAGCTTTCCACGATCGATGGTCAAGACTTCTGGTTCATGGGTTTCGTGAATCATGAGAAAGCATCGAAGCATCTTCTCAATGGTGTCGCGACTTGTGTTAAAACTATCACACATATTTAG 711 45.99 MKPNNQPGPSSSSAPVGNYWGTHVMGTPAPQSSSNYPPPQYGVPQPPPPPQPNNIDNVRKKLNSWGNKAETAATNIWTNLKAGRSVTESAWGKMNLTAKALTEGGFESLYKQNFTTYPNEKLKRTFACHLSTSSGPVAGTLYLSNVHVAFCSDRPLSSVQPNGMESWIYYKVIIPLEKIATVQPVTIPGKKQVDKYIQLSTIDGQDFWFMGFVNHEKASKHLLNGVATCVKTITHI 236
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi7g01699 236 Pfam GRAM domain 111 221 IPR004182 -
Lomi7g01699 236 MobiDBLite consensus disorder prediction 1 54 - -
Lomi7g01699 236 MobiDBLite consensus disorder prediction 32 54 - -
Lomi7g01699 236 Gene3D - 106 227 IPR011993 -
Lomi7g01699 236 PANTHER GEM-LIKE PROTEIN 2 40 225 IPR037848 -
Lomi7g01699 236 MobiDBLite consensus disorder prediction 1 18 - -
Lomi7g01699 236 SMART gram2001c 108 186 IPR004182 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi7g01699 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
326405 Lomi7g01699 Lomi6g01930
330783 Lomi6g01930 Lomi7g01699
330807 Lomi6g02182 Lomi7g01699
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr7:27350126 Lomi8g01215 Lomi-Chr8:11593701 dispersed
Lomi Lomi-Chr6:27201433 Lomi7g01699 Lomi-Chr7:27350126 wgd
Lomi Lomi-Chr6:30124353 Lomi7g01699 Lomi-Chr7:27350126 wgd