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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lomi7g01721 ATGGAAATGCAAAACGATTTCGATCGCCTTCTGTTCTTCGAACATGCTCGCCGTAGTGCCGAAGTCACTTACGCCAAAAATCCTCTCGATACCGAGAATTTGACTAGATGGGGAGGGGCGTTGCTTGAATTGTCGACTTTTCAGAGTGTTCAAGAATCAAAAGCTATGATTAAAGATGCTATATCGAAATTGGATGAAGCATTATCCATTGATCCGAAGAAACATGATGCTTTGTGGTGTATGGGGAATGCACAAACTTCTTATGCTTTTGTTACTCCTGATAAAGATGAAGCTAAGGGCTATTTTGATTCAGCTTATACTTACTTTCAGCAGGCTCTTGATGAGGATCCAGGGAATGAACTTTACCGCAAATCTTTCGAAGTATCGATAAAGGCTCCGGAAATACACTCAGAGCTCCATAAACAGGGCTTTAGTCAACAAGCTATGGGACCAGCAGCTAGTGGAGGTCCTTCAACTTCTTCAAGTGTCAAGGGTCCCAAGGCACAAAAGAGTAGTGATCTGAAGTATGATATATTTGGATGGGTTATTCTTGCTGTTACTATTGTGGCATGGGTTAGCTTCTCCAAATCAAATGTACCTTCACCACCTCCTCGATAA 618 42.07 MEMQNDFDRLLFFEHARRSAEVTYAKNPLDTENLTRWGGALLELSTFQSVQESKAMIKDAISKLDEALSIDPKKHDALWCMGNAQTSYAFVTPDKDEAKGYFDSAYTYFQQALDEDPGNELYRKSFEVSIKAPEIHSELHKQGFSQQAMGPAASGGPSTSSSVKGPKAQKSSDLKYDIFGWVILAVTIVAWVSFSKSNVPSPPPR 205
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lomi7g01721 205 MobiDBLite consensus disorder prediction 141 168 - -
Lomi7g01721 205 PANTHER MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20-1-RELATED 1 204 IPR010547 GO:0005742(InterPro)|GO:0045040(InterPro)
Lomi7g01721 205 Gene3D Tetratricopeptide repeat domain 1 149 IPR011990 GO:0005515(InterPro)
Lomi7g01721 205 SUPERFAMILY TPR-like 13 123 IPR011990 GO:0005515(InterPro)
Lomi7g01721 205 Pfam Plant specific mitochondrial import receptor subunit TOM20 7 196 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lomi7g01721 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
330810 Lomi6g02210 Lomi7g01721
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lomi Lomi-Chr7:27732818 Lomi8g02406 Lomi-Chr8:33644790 dispersed
Lomi Lomi-Chr10:32083821 Lomi7g01721 Lomi-Chr7:27732818 wgd
Lomi Lomi-Chr6:30363948 Lomi7g01721 Lomi-Chr7:27732818 wgd
Lomi Lomi-Chr6:27535035 Lomi7g01721 Lomi-Chr7:27732818 wgd
Lomi Lomi-Chr7:27732818 Lomi7g01953 Lomi-Chr7:30285251 wgd