AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa3g03599 ATGGAATCGCAAAACGACTTCGATCGGCTTCTCTTTTTTGAGCATGCTCGCCGGAGTGCCGAAGTTACTTATGCAAAAAATCCTCTCGATACAGAGAATCTAACCAGATGGGGAGGGTCGTTGCTTGAATTGTCGACCTTCCAGAGTGTTCAGGAATCAAAAGTCATGATTAAAGATGCTATATCTAAATTGGATGAAGCATTATCGATTGATCCAAGGAAACATGATGCGTTGTGGTATATGGGCAATGCACAAACTTCTTATGCTTTTCTTACTCCTGATAAAGATGAAGCGAAAAGCTATTTTGATTCAGCTTACACTTACTTTCAGAAGGCTGTTGATGAGGATCCAGGGAATGAACTTTACCTCAAATCATTTGAAGTAGCTACAAAGGTATGTCCTGTTCATGTTTCTCCATTATCTCCTCTAGGTCAAAATTTCACATTTTTACACCAGTGA 459 39.65 MESQNDFDRLLFFEHARRSAEVTYAKNPLDTENLTRWGGSLLELSTFQSVQESKVMIKDAISKLDEALSIDPRKHDALWYMGNAQTSYAFLTPDKDEAKSYFDSAYTYFQKAVDEDPGNELYLKSFEVATKVCPVHVSPLSPLGQNFTFLHQ 152
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa3g03599 152 Pfam Plant specific mitochondrial import receptor subunit TOM20 7 137 - -
Lssa3g03599 152 PANTHER MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20-1-RELATED 1 136 IPR010547 GO:0005742(InterPro)|GO:0045040(InterPro)
Lssa3g03599 152 Gene3D Tetratricopeptide repeat domain 1 151 IPR011990 GO:0005515(InterPro)
Lssa3g03599 152 SUPERFAMILY TPR-like 13 124 IPR011990 GO:0005515(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa3g03599 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
125877 Lssa2g03025 Lssa3g03599
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr3:208933019 Lssa4g00113 Lssa-Chr4:4272657 dispersed
Lssa Lssa-Chr2:187856192 Lssa3g03599 Lssa-Chr3:208933019 transposed
Lssa Lssa-Chr3:42278689 Lssa3g03599 Lssa-Chr3:208933019 wgd