AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa3g03624 ATGGGAACAGAGAACCATAGATCGTCCGTTGAAATATCTGAACCCTTGCTTCACGAATCAAATCAGGAGAAACCCATCGAATTGGATCTAGAAACGATTCCGGAATGGAAAGATCAGATCACGTTAAGGGGTTTAGTTGTGAGTGCTTTACTGGGAACGCTTTTTTGTATCATCACACACAAGCTCAATCTCACCGTCGGAATCATCCCGTCTTTAAACGTCGCCGCCGGTTTGCTGGGGTTTTTCTTTGTCAAATCATGGACTACTTTCCTCGATAAGTTGGGGTTTTTTGTTAAGCCGTTCACGAAGCAGGAGAACACTGTAATTCAGACTTGCGTTGTTGCTTGCTATGGCCTTGCTTTCAGCGGTGGATTTGGATCATATCTGCTTTCAATGGATGAGAGAACATACAATTTGATTGGTGCTGATTACCCTGGAAATCGGGCTGAAGATGTTAAGAACCCAGGATTATTATGGATGATGGGTTTCATTTTTGTTGTCAGTTTTCTTGGCCTTTTCAGTCTTGTACCACTTCGCAAGGTGATGGTAATGGATTATAAGCTTACATACCCCAGTGGAACAGCCACAGCAATGTTGATAAATAGTTTTCACACTACTACGGGTGCAGAGCTTGCAGGGAAACAGGTAAACTCTCTTGGAAAGTATTTGAGCATAAGTTTTGTGTGGAGTTTCTTTAAGTGGTTCTTCAGTGGTGTTGGGGATTCATGTGGTTTTGATAATTTTCCTAGTTTTGGGCTGCTGCTGTATAAGAACACATTTTACTTTGACTTTAGTCCTACTTATGTTGGATGTGGACTTATTTGCCCTCACATAGTCAACTGTTCGGTGCTTTTTGGAGCTATTGTCTCATGGGGATTTCTTTGGCCGTACATTACTACACGTGCAGGCGATTGGTATCCAGCTGATCTTGGCACCAATGACTTCAAAGGTCTCTACGGTTACAAGGTATTTATAGCTATTTCCCTAATTCTTGGAGACGGTCTTTACAATCTAGTCAAGATAGTTGCTATTTCTGTTAAGGCAATCTGGAAAAACACCACCAAACCACAAGATCTCCCTACAACAAAACAGATCCTAGATTCCGAAAAAACCAAAGCACAACTAGAGGAACAAAAAAGAGACGCCGTGTTCCTAAAAGACAGTATCCCAACATGGTTGGCAGCCTCAGGCTACGTAGCCCTAGTCGCGATATCCATGGCCACAATGCCTTTAATCTTCCCACCTCTAAAATGGTACCTTGTCCTCGCCTCATACGTCATTGCCCCCGCCCTCGCCTTCTGCAACTCATACGGAACCGGTCTCACAGACTGGAGCCTCGCGTCTACGTACGGCAAAATCGGCCTTTTCATCATCGCGTCAATCGTTGGATCCGACGGCGGCGTCATCGCCGGATTAGCGGCGTGCGGCGTCATGATGTCGATTGTCGCCACAGCCGCCGACCTAATGCAAGACTTCAAAACCGGTTACCTAACTTTATCGTCCGCGAAATCGATGTTCGTGAGTCAGTTGGTTGGCACTGCAATGGGATGTGTGATCGCGCCGTTGACTTTTTGGATGTTTTGGAGCGCGTTTGAGATCGGGACACCCGATAGTCCGTATAAAGCGCCGTACGCGGTTATATATCGAGAAATGGCGATTCTTGGAGTTGAAGGGTTTTCGGAGCTTCCGAAACATTGTTTGGCGTTGTGTTGTGGGTTTTTTGTGGCGGCGTTGGTTTTGAATTTGGTTAGGGATTGGAGTCCGGCGAAGGTGGCGCAGTTTGTTCCGATTCCGATGGCGATGGCGGTGCCGTTTTATATCGGGGCGTATTTTGCGATTGATATGTTTGTTGGGACGGTGATTTTGTTTGTGTGGGAAAGAGTGAATAAGAAGGATGCGGAGGATTATGCCGGTGCGGTTGCTTCCGGGTTGATTTGTGGGGACGGGATTTGGACGATTCCGTCTGCGATTCTCTCGATTTTGAGGATTGATCCGCCGATTTGTATGTACTTTGGGCCTTCGGTGAGCTCTTGA 2034 46.17 MGTENHRSSVEISEPLLHESNQEKPIELDLETIPEWKDQITLRGLVVSALLGTLFCIITHKLNLTVGIIPSLNVAAGLLGFFFVKSWTTFLDKLGFFVKPFTKQENTVIQTCVVACYGLAFSGGFGSYLLSMDERTYNLIGADYPGNRAEDVKNPGLLWMMGFIFVVSFLGLFSLVPLRKVMVMDYKLTYPSGTATAMLINSFHTTTGAELAGKQVNSLGKYLSISFVWSFFKWFFSGVGDSCGFDNFPSFGLLLYKNTFYFDFSPTYVGCGLICPHIVNCSVLFGAIVSWGFLWPYITTRAGDWYPADLGTNDFKGLYGYKVFIAISLILGDGLYNLVKIVAISVKAIWKNTTKPQDLPTTKQILDSEKTKAQLEEQKRDAVFLKDSIPTWLAASGYVALVAISMATMPLIFPPLKWYLVLASYVIAPALAFCNSYGTGLTDWSLASTYGKIGLFIIASIVGSDGGVIAGLAACGVMMSIVATAADLMQDFKTGYLTLSSAKSMFVSQLVGTAMGCVIAPLTFWMFWSAFEIGTPDSPYKAPYAVIYREMAILGVEGFSELPKHCLALCCGFFVAALVLNLVRDWSPAKVAQFVPIPMAMAVPFYIGAYFAIDMFVGTVILFVWERVNKKDAEDYAGAVASGLICGDGIWTIPSAILSILRIDPPICMYFGPSVSS 677
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa3g03624 677 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 20 673 IPR045035 GO:0016020(PANTHER)|GO:0035673(InterPro)
Lssa3g03624 677 Pfam OPT oligopeptide transporter protein 39 658 IPR004813 GO:0035673(InterPro)
Lssa3g03624 677 NCBIfam OPT family oligopeptide transporter 38 655 IPR004813 GO:0035673(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa3g03624 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
126702 Lssa3g03624 Lssa4g06251
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr3:211119428 Lssa8g04019 Lssa-Chr8:187950630 dispersed
Lssa Lssa-Chr3:211119428 Lssa8g00191 Lssa-Chr8:6130613 transposed
Lssa Lssa-Chr3:211119428 Lssa9g01987 Lssa-Chr9:65678900 transposed