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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa3g03632 ATGCCAGAGGAAGATCTTTTAGAAGTAAAGTTTCGATTGTTTGATGGATCTGACATTGGTCCATTTCGGTATTCTCCAGCTTCCACGATTTCCCTTCTGAAAGAGAGAATTGTCGCTGAATGGCCCAAAGATAAAAAAGGTGGACCCAAATCAGCAAATGACATCAAATTGATAAATGCTGGTAAAATTTTGGAAAACAATAAGACTGTTGGCCAGTGTAGAACACCATTTGGAGATCTACCAATTACAATGCATGCTCTTGTACAAGTTTCTTTAACCAAGACAAAAACAGTTCTGTTAACTGAGAATGATATTTGTTCTGTTGTTCTTGGAGAAGCTGCTTTGAACTTGCAATCTATTCTTACTTCTGCCCCTGTGGTGTTTTTTTGA 390 37.69 MPEEDLLEVKFRLFDGSDIGPFRYSPASTISLLKERIVAEWPKDKKGGPKSANDIKLINAGKILENNKTVGQCRTPFGDLPITMHALVQVSLTKTKTVLLTENDICSVVLGEAALNLQSILTSAPVVFF 129
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa3g03632 129 PANTHER UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN 1 98 IPR040015 -
Lssa3g03632 129 Pfam Ubiquitin-2 like Rad60 SUMO-like 5 97 IPR039540 -
Lssa3g03632 129 ProSiteProfiles Ubiquitin domain profile. 7 73 IPR000626 GO:0005515(InterPro)
Lssa3g03632 129 CDD Ubl-MUBs-plant 6 89 - -
Lssa3g03632 129 SUPERFAMILY Ubiquitin-like 2 93 IPR029071 -
Lssa3g03632 129 Gene3D - 1 97 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa3g03632 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
125879 Lssa2g03034 Lssa3g03632
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr3:211968079 Lssa9g01521 Lssa-Chr9:48595033 dispersed
Lssa Lssa-Chr2:188317106 Lssa3g03632 Lssa-Chr3:211968079 wgd